Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   SOI78_RS01935 Genome accession   NZ_CP139276
Coordinates   409355..410164 (+) Length   269 a.a.
NCBI ID   WP_005067126.1    Uniprot ID   A0A009NM66
Organism   Acinetobacter pittii strain AN37     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 404355..415164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI78_RS01900 (SOI78_01900) - 404913..405035 (-) 123 Protein_367 hypothetical protein -
  SOI78_RS01905 (SOI78_01905) rpoZ 405107..405385 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  SOI78_RS01910 (SOI78_01910) gmk 405458..406087 (-) 630 WP_005804544.1 guanylate kinase -
  SOI78_RS01915 (SOI78_01915) ispH 406210..407160 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SOI78_RS01920 (SOI78_01920) fimU 407330..407803 (+) 474 WP_005804545.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SOI78_RS01925 (SOI78_01925) pilV 407797..408357 (+) 561 WP_078210318.1 type IV pilus modification protein PilV Machinery gene
  SOI78_RS01930 (SOI78_01930) pilW 408357..409358 (+) 1002 WP_005804547.1 PilW family protein Machinery gene
  SOI78_RS01935 (SOI78_01935) pilX 409355..410164 (+) 810 WP_005067126.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SOI78_RS01940 (SOI78_01940) pilY1 410176..414030 (+) 3855 WP_005804549.1 PilC/PilY family type IV pilus protein Machinery gene
  SOI78_RS01945 (SOI78_01945) pilY2 414041..414523 (+) 483 WP_005804550.1 type IV pilin protein Machinery gene
  SOI78_RS01950 (SOI78_01950) pilE 414520..414945 (+) 426 WP_025464177.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28531.35 Da        Isoelectric Point: 7.7238

>NTDB_id=908652 SOI78_RS01935 WP_005067126.1 409355..410164(+) (pilX) [Acinetobacter pittii strain AN37]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTTDYGSNRQAVVTQVAVSVPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=908652 SOI78_RS01935 WP_005067126.1 409355..410164(+) (pilX) [Acinetobacter pittii strain AN37]
ATGACCCATTTAATTCATAAGAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACTCCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAATCCTGGAGCGGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGTGCAAGTTTACTTCGAGCAGGAAGCGCCAATAATGCGGTTGTCGAAGATGGCGGCGTGGCGG
GTTTCTGCAATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAGCGATATTCCAGGCTCAAATTTACCACGAGGAACAAATACCTCGGAAGGTACGCAACTTCCTAAAAGCATGTT
GTCTACGCAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGTTTAAGCACGAGTTCGGCAAAAATTAGCGATAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009NM66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

89.706

100

0.907