Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   SOI78_RS01920 Genome accession   NZ_CP139276
Coordinates   407330..407803 (+) Length   157 a.a.
NCBI ID   WP_005804545.1    Uniprot ID   A0A009N256
Organism   Acinetobacter pittii strain AN37     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 402330..412803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI78_RS01895 (SOI78_01895) spoT 402792..404897 (-) 2106 WP_002116807.1 RelA/SpoT family protein -
  SOI78_RS01900 (SOI78_01900) - 404913..405035 (-) 123 Protein_367 hypothetical protein -
  SOI78_RS01905 (SOI78_01905) rpoZ 405107..405385 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  SOI78_RS01910 (SOI78_01910) gmk 405458..406087 (-) 630 WP_005804544.1 guanylate kinase -
  SOI78_RS01915 (SOI78_01915) ispH 406210..407160 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SOI78_RS01920 (SOI78_01920) fimU 407330..407803 (+) 474 WP_005804545.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SOI78_RS01925 (SOI78_01925) pilV 407797..408357 (+) 561 WP_078210318.1 type IV pilus modification protein PilV Machinery gene
  SOI78_RS01930 (SOI78_01930) pilW 408357..409358 (+) 1002 WP_005804547.1 PilW family protein Machinery gene
  SOI78_RS01935 (SOI78_01935) pilX 409355..410164 (+) 810 WP_005067126.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16912.60 Da        Isoelectric Point: 7.7942

>NTDB_id=908649 SOI78_RS01920 WP_005804545.1 407330..407803(+) (fimU) [Acinetobacter pittii strain AN37]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTILSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=908649 SOI78_RS01920 WP_005804545.1 407330..407803(+) (fimU) [Acinetobacter pittii strain AN37]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAATCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAGCCAAGCCATACTTGGTCGACAAGACGTTTCTATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAACTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCATTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGGGTAATAACCAATATCACCCAAGACACAATTTTATCTATCTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009N256

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

87.898

100

0.879