Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   SOI78_RS01800 Genome accession   NZ_CP139276
Coordinates   381231..382010 (+) Length   259 a.a.
NCBI ID   WP_005804531.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AN37     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 376231..387010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI78_RS01785 (SOI78_01785) ponA 376812..379373 (-) 2562 WP_005804528.1 penicillin-binding protein PBP1a -
  SOI78_RS01790 (SOI78_01790) pilM 379535..380593 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  SOI78_RS01795 (SOI78_01795) pilN 380593..381234 (+) 642 WP_005804530.1 PilN domain-containing protein Machinery gene
  SOI78_RS01800 (SOI78_01800) pilO 381231..382010 (+) 780 WP_005804531.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI78_RS01805 (SOI78_01805) pilP 382022..382549 (+) 528 WP_005804532.1 pilus assembly protein PilP Machinery gene
  SOI78_RS01810 (SOI78_01810) pilQ 382612..384777 (+) 2166 WP_002116833.1 type IV pilus secretin PilQ Machinery gene
  SOI78_RS01815 (SOI78_01815) aroK 384789..385358 (+) 570 WP_002116987.1 shikimate kinase AroK -
  SOI78_RS01820 (SOI78_01820) aroB 385387..386469 (+) 1083 WP_005804533.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29431.54 Da        Isoelectric Point: 5.7456

>NTDB_id=908646 SOI78_RS01800 WP_005804531.1 381231..382010(+) (pilO) [Acinetobacter pittii strain AN37]
MSPDELHELSLEQAPSKKKKITLEKFLQQFNTLDMNSYGSWPLSVKITCWIFIFFAVLALGYFVAIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQLQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
ITIEATGDYHAFGAFVSSIAALPRIVTIHDFIVEAAPVKDGKSDIPVLNYSIKAKTYRYMGAVENQNNSDPQVINGESQI
NASDSRNVHIPSIKKSKRK

Nucleotide


Download         Length: 780 bp        

>NTDB_id=908646 SOI78_RS01800 WP_005804531.1 381231..382010(+) (pilO) [Acinetobacter pittii strain AN37]
ATGAGTCCTGATGAACTTCATGAGCTGTCTTTAGAACAAGCTCCATCTAAGAAAAAAAAGATCACCTTAGAAAAATTTCT
TCAGCAATTTAACACGCTCGATATGAACAGTTATGGCAGCTGGCCATTATCTGTGAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTATTGGCTTTAGGGTATTTTGTTGCTATTCAACCAAAGCTACAAGCAATTGATAATGCTCAAGCACAAGAA
AGTAATTTATTAAATGAGTTTCGAGAAAAAGACTCAAAATTACGCAACTTGCAGCAATACCAGCTTCAACTTCAAGAGAT
GCAAGCCAACTTCAATCAGCAGTTAGAACAATTGCCAAAAGAAACCGAAATTCCAAGTTTAGTTGAAGATATTAACTTAA
CGGGGGTGAATTCTGGTCTGAAGTTTAAAAATATCCGCTTAGAAGATGAAGTGAAGCAGGAAATTTTTATTGAACAGCCT
ATTACTATCGAAGCAACTGGGGATTATCACGCTTTCGGTGCTTTTGTTAGCAGTATTGCGGCATTACCACGTATTGTGAC
GATACATGATTTTATTGTTGAGGCTGCTCCTGTTAAGGATGGTAAATCAGATATTCCTGTGCTTAATTATTCTATCAAAG
CAAAAACTTATCGCTATATGGGTGCGGTTGAAAACCAAAATAATAGTGATCCTCAAGTGATAAATGGTGAAAGTCAGATA
AACGCCTCCGATAGCCGTAATGTACATATTCCTTCTATAAAGAAGTCAAAGCGAAAGTAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

89.286

86.486

0.772
  comO Acinetobacter baylyi ADP1

71.674

89.961

0.645