Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   SOI78_RS01805 Genome accession   NZ_CP139276
Coordinates   382022..382549 (+) Length   175 a.a.
NCBI ID   WP_005804532.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AN37     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 377022..387549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI78_RS01790 (SOI78_01790) pilM 379535..380593 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  SOI78_RS01795 (SOI78_01795) pilN 380593..381234 (+) 642 WP_005804530.1 PilN domain-containing protein Machinery gene
  SOI78_RS01800 (SOI78_01800) pilO 381231..382010 (+) 780 WP_005804531.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI78_RS01805 (SOI78_01805) pilP 382022..382549 (+) 528 WP_005804532.1 pilus assembly protein PilP Machinery gene
  SOI78_RS01810 (SOI78_01810) pilQ 382612..384777 (+) 2166 WP_002116833.1 type IV pilus secretin PilQ Machinery gene
  SOI78_RS01815 (SOI78_01815) aroK 384789..385358 (+) 570 WP_002116987.1 shikimate kinase AroK -
  SOI78_RS01820 (SOI78_01820) aroB 385387..386469 (+) 1083 WP_005804533.1 3-dehydroquinate synthase -
  SOI78_RS01825 (SOI78_01825) - 386486..387355 (+) 870 WP_005804534.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19252.40 Da        Isoelectric Point: 9.7301

>NTDB_id=908647 SOI78_RS01805 WP_005804532.1 382022..382549(+) (pilP) [Acinetobacter pittii strain AN37]
MKLKKILLSLGIGLVLVGCDSRIDAVNQQMADIRNQPPQAIEPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRASQPLESYALESLNMKGSMRNSRGQVMALIQTPDHQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=908647 SOI78_RS01805 WP_005804532.1 382022..382549(+) (pilP) [Acinetobacter pittii strain AN37]
ATGAAACTAAAGAAAATTTTACTTTCTCTGGGGATAGGCTTGGTTCTGGTTGGATGCGACTCTAGAATCGACGCCGTAAA
TCAGCAAATGGCCGATATACGTAATCAGCCACCACAAGCCATAGAACCAGCGCCTGTTTTTACGCCTGTGCCACAATTTA
ATTATGCAGCCCATCAGTTAAAGAGCCCATTTTTACCAAGCTCACTTGCTGCTGAGCTCAAAATTATGGCGGGGAAACGA
GTATATCCGAATTTCTCACGTGCATCACAGCCACTCGAAAGCTATGCATTAGAGTCCTTAAATATGAAAGGAAGTATGCG
TAACAGCCGTGGGCAAGTCATGGCTCTGATCCAAACACCTGATCATCAAATTGAGCGAGTACAGGTAGGGAACTATATCG
GGATGAATCAAGGTCGAATTACCCATATTGGTCCTACTCAGATTGATCTGGTGGAGATTGTCCCTGATGGGCGAGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

86.857

100

0.869
  comL Acinetobacter baylyi ADP1

73.964

96.571

0.714