Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SOI77_RS16330 Genome accession   NZ_CP139275
Coordinates   3440659..3441063 (-) Length   134 a.a.
NCBI ID   WP_202745084.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HCG138     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3435659..3446063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI77_RS16300 (SOI77_16300) - 3435743..3436012 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  SOI77_RS16305 (SOI77_16305) rapZ 3436009..3436860 (-) 852 WP_002117179.1 RNase adapter RapZ -
  SOI77_RS16310 (SOI77_16310) panC 3436884..3437732 (-) 849 WP_206236608.1 pantoate--beta-alanine ligase -
  SOI77_RS16315 (SOI77_16315) panB 3437736..3438545 (-) 810 WP_320561795.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  SOI77_RS16320 (SOI77_16320) folK 3438591..3439073 (-) 483 WP_320561796.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  SOI77_RS16325 (SOI77_16325) pcnB 3439070..3440533 (-) 1464 WP_005066269.1 polynucleotide adenylyltransferase PcnB -
  SOI77_RS16330 (SOI77_16330) comEA 3440659..3441063 (-) 405 WP_202745084.1 ComEA family DNA-binding protein Machinery gene
  SOI77_RS16335 (SOI77_16335) mazG 3441032..3441838 (-) 807 WP_202745083.1 nucleoside triphosphate pyrophosphohydrolase -
  SOI77_RS16340 (SOI77_16340) - 3441951..3442724 (+) 774 WP_202745082.1 SDR family oxidoreductase -
  SOI77_RS16345 (SOI77_16345) relA 3442771..3445077 (-) 2307 WP_002117181.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15433.69 Da        Isoelectric Point: 10.4871

>NTDB_id=908625 SOI77_RS16330 WP_202745084.1 3440659..3441063(-) (comEA) [Acinetobacter pittii strain HCG138]
MQLSMNLWKNKHNIFIILFWSVISSTFVQAQSFDQNFKEWKAKQQMYDQKLSMQHASHSNSPKSSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=908625 SOI77_RS16330 WP_202745084.1 3440659..3441063(-) (comEA) [Acinetobacter pittii strain HCG138]
ATGCAGCTCAGCATGAATCTTTGGAAAAATAAGCACAATATTTTCATTATTTTATTTTGGAGCGTGATTTCATCAACTTT
TGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCTAAACAGCAGATGTATGATCAGAAGTTGAGCATGC
AACACGCCTCTCATTCTAATAGTCCAAAAAGCTCAGTTATGACTGATTCATCAGGACAAATTCATTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCAATTGTGGAATACCGTCAAAAGAATGGCGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGTATTGGTCCAGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

70.803

100

0.724
  comEA Acinetobacter baumannii D1279779

70.073

100

0.716
  comEA Acinetobacter baylyi ADP1

41.935

92.537

0.388