Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   SOI77_RS01640 Genome accession   NZ_CP139275
Coordinates   351585..352034 (+) Length   149 a.a.
NCBI ID   WP_057068824.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HCG138     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 346585..357034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI77_RS01620 (SOI77_01620) - 347965..348852 (+) 888 WP_262448436.1 metal-dependent hydrolase -
  SOI77_RS01625 (SOI77_01625) - 348984..349574 (+) 591 WP_002117090.1 LemA family protein -
  SOI77_RS01630 (SOI77_01630) - 349599..350681 (+) 1083 WP_320561999.1 TPM domain-containing protein -
  SOI77_RS01635 (SOI77_01635) - 350675..351235 (+) 561 WP_068526918.1 TPM domain-containing protein -
  SOI77_RS01640 (SOI77_01640) pilA 351585..352034 (+) 450 WP_057068824.1 pilin Machinery gene
  SOI77_RS01645 (SOI77_01645) - 352096..353409 (+) 1314 WP_320562000.1 O-antigen ligase family protein -
  SOI77_RS01650 (SOI77_01650) - 353515..355143 (+) 1629 WP_320562001.1 PglL family O-oligosaccharyltransferase -
  SOI77_RS01655 (SOI77_01655) bfr 355187..355651 (-) 465 WP_320562002.1 heteropolymeric bacterioferritin subunit Bfr -
  SOI77_RS01660 (SOI77_01660) bfd 355895..356089 (-) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  SOI77_RS19400 - 356192..356274 (+) 83 Protein_318 hypothetical protein -
  SOI77_RS01665 (SOI77_01665) - 356307..356690 (-) 384 WP_002116996.1 RidA family protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 15168.16 Da        Isoelectric Point: 7.7737

>NTDB_id=908601 SOI77_RS01640 WP_057068824.1 351585..352034(+) (pilA) [Acinetobacter pittii strain HCG138]
MNAQKGFTLIELMIVVAIIGILAAIAIPQYQNYIARSQASEAFTLADGLKATIATNLQSGTCFADGKASATAGTDDITGK
YGKATIVTSTTAGSKCAISYKFNSSGVSNKLNASGADTIVADVGENGTLTKASGTTVPAEYLPQSFKAS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=908601 SOI77_RS01640 WP_057068824.1 351585..352034(+) (pilA) [Acinetobacter pittii strain HCG138]
ATGAATGCACAAAAAGGTTTTACATTAATTGAACTCATGATCGTAGTTGCCATTATTGGTATTTTGGCTGCAATTGCGAT
TCCTCAGTATCAAAATTATATTGCTCGTTCACAGGCTTCAGAAGCTTTTACTCTTGCAGATGGCTTAAAAGCAACAATTG
CAACAAATTTGCAATCTGGAACTTGTTTCGCAGATGGAAAAGCATCAGCAACAGCTGGTACAGATGATATTACTGGAAAG
TATGGTAAAGCAACAATTGTGACGAGTACGACAGCTGGCAGCAAATGTGCTATCTCTTATAAATTTAATAGTTCAGGGGT
TTCTAATAAACTAAATGCATCAGGTGCAGATACAATCGTAGCTGATGTTGGTGAAAATGGCACTTTAACTAAAGCTTCAG
GTACGACAGTACCGGCTGAATATTTACCTCAGTCTTTCAAAGCATCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter nosocomialis M2

67.114

100

0.671
  comP Acinetobacter baylyi ADP1

38.095

98.658

0.376
  pilE Neisseria gonorrhoeae MS11

39.706

91.275

0.362