Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SOI80_RS16030 Genome accession   NZ_CP139270
Coordinates   3274811..3275215 (-) Length   134 a.a.
NCBI ID   WP_019767972.1    Uniprot ID   A0A242T1I5
Organism   Acinetobacter pittii strain HCG62     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3269811..3280215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI80_RS16000 (SOI80_16005) - 3269895..3270164 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  SOI80_RS16005 (SOI80_16010) rapZ 3270161..3271012 (-) 852 WP_002117179.1 RNase adapter RapZ -
  SOI80_RS16010 (SOI80_16015) panC 3271036..3271884 (-) 849 WP_002117191.1 pantoate--beta-alanine ligase -
  SOI80_RS16015 (SOI80_16020) panB 3271888..3272697 (-) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  SOI80_RS16020 (SOI80_16025) folK 3272743..3273225 (-) 483 WP_019767970.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  SOI80_RS16025 (SOI80_16030) pcnB 3273222..3274685 (-) 1464 WP_019767971.1 polynucleotide adenylyltransferase PcnB -
  SOI80_RS16030 (SOI80_16035) comEA 3274811..3275215 (-) 405 WP_019767972.1 ComEA family DNA-binding protein Machinery gene
  SOI80_RS16035 (SOI80_16040) mazG 3275184..3275990 (-) 807 WP_019767973.1 nucleoside triphosphate pyrophosphohydrolase -
  SOI80_RS16040 (SOI80_16045) - 3276103..3276876 (+) 774 WP_019767974.1 SDR family oxidoreductase -
  SOI80_RS16045 (SOI80_16050) relA 3276923..3279229 (-) 2307 WP_002117181.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15382.68 Da        Isoelectric Point: 10.5869

>NTDB_id=908577 SOI80_RS16030 WP_019767972.1 3274811..3275215(-) (comEA) [Acinetobacter pittii strain HCG62]
MQLSMNLWKNKHNIFIVLFWSLISSALVQAQSFDQNFKEWKAKQQMYDQKLSVQRPSHSNSPKSSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=908577 SOI80_RS16030 WP_019767972.1 3274811..3275215(-) (comEA) [Acinetobacter pittii strain HCG62]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAACACAATATTTTCATTGTTTTATTTTGGAGCCTGATCTCATCAGCCCT
AGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAAGCGAAACAGCAGATGTATGATCAGAAGTTGAGCGTGC
AGCGGCCCTCTCATTCTAATAGTCCAAAAAGTTCAGTTATGACTGATTCGTCAGGGCAAATTCACTTAAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCGATTGTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGTATTGGTCCAGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A242T1I5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

69.343

100

0.709
  comEA Acinetobacter baumannii D1279779

69.343

100

0.709
  comEA Acinetobacter baylyi ADP1

42.742

92.537

0.396