Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   SOI80_RS03465 Genome accession   NZ_CP139270
Coordinates   703292..703675 (+) Length   127 a.a.
NCBI ID   WP_000389061.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HCG62     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 698292..708675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI80_RS03455 (SOI80_03455) nolF 701192..702301 (-) 1110 WP_080973437.1 efflux RND transporter periplasmic adaptor subunit -
  SOI80_RS03460 (SOI80_03460) - 702370..703008 (-) 639 WP_032042644.1 hypothetical protein -
  SOI80_RS03465 (SOI80_03465) pilG 703292..703675 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  SOI80_RS03470 (SOI80_03470) pilH 703698..704060 (+) 363 WP_002116220.1 response regulator -
  SOI80_RS03475 (SOI80_03475) pilI 704121..704657 (+) 537 WP_002116439.1 chemotaxis protein CheW -
  SOI80_RS03480 (SOI80_03480) pilJ 704700..706778 (+) 2079 WP_032042642.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14200.23 Da        Isoelectric Point: 4.5762

>NTDB_id=908565 SOI80_RS03465 WP_000389061.1 703292..703675(+) (pilG) [Acinetobacter pittii strain HCG62]
MEDAFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSQNYQ
NIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVSS

Nucleotide


Download         Length: 384 bp        

>NTDB_id=908565 SOI80_RS03465 WP_000389061.1 703292..703675(+) (pilG) [Acinetobacter pittii strain HCG62]
ATGGAAGATGCATTCCAAAATCTGAAAGTAATGGTGATTGATGACTCAAAAACCATTCGCCGTACAGCAGAAACCTTATT
ACAGCGCGAAGGCTGTGAAGTCATTACTGCTGTGGATGGATTTGAAGCTTTGTCCAAAATTGCAGAAGCAAATCCGGATA
TTGTTTTTGTCGATATCATGATGCCTCGTTTAGATGGTTATCAAACTTGTGCTTTGATAAAAAACTCTCAAAATTATCAG
AACATTCCCGTTATCATGCTCTCTAGTAAAGATGGTTTATTTGATCAGGCAAAAGGGCGTGTGGTAGGTTCAGATGAATA
CTTGACGAAACCTTTTAGCAAAGATGAATTGTTAAACGCGATTCGTAATCATGTAAGTTCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

100

100

1
  vicR Streptococcus mutans UA159

42.735

92.126

0.394
  pilH Synechocystis sp. PCC 6803

41.593

88.976

0.37