Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABRP06_RS15590 Genome accession   NZ_CP158329
Coordinates   3140800..3141429 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 130119     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3135800..3146429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRP06_RS15575 (ABRP06_15565) helD 3136042..3138096 (-) 2055 WP_053263464.1 DNA helicase IV -
  ABRP06_RS15580 (ABRP06_15570) yccF 3138219..3138665 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABRP06_RS15585 (ABRP06_15575) yccS 3138675..3140837 (+) 2163 WP_000875061.1 YccS family putative transporter -
  ABRP06_RS15590 (ABRP06_15580) sxy/tfoX 3140800..3141429 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABRP06_RS15595 (ABRP06_15585) sulA 3141648..3142157 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ABRP06_RS15600 (ABRP06_15590) ompA 3142514..3143554 (+) 1041 WP_000750416.1 porin OmpA -
  ABRP06_RS15605 (ABRP06_15595) matP 3143630..3144082 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ABRP06_RS15610 (ABRP06_15600) ycbZ 3144268..3146028 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=908565 ABRP06_RS15590 WP_000839153.1 3140800..3141429(-) (sxy/tfoX) [Escherichia coli strain 130119]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=908565 ABRP06_RS15590 WP_000839153.1 3140800..3141429(-) (sxy/tfoX) [Escherichia coli strain 130119]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1