Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   SOI79_RS06280 Genome accession   NZ_CP139266
Coordinates   1316473..1317885 (+) Length   470 a.a.
NCBI ID   WP_284088141.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HUM14     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1311473..1322885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI79_RS06260 (SOI79_06260) thrC 1311731..1312870 (+) 1140 WP_002048893.1 threonine synthase -
  SOI79_RS06265 (SOI79_06265) pbpG 1312976..1314022 (-) 1047 WP_284088143.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  SOI79_RS06270 (SOI79_06270) gacA 1314235..1314870 (+) 636 WP_002121174.1 response regulator -
  SOI79_RS06275 (SOI79_06275) pilS 1314881..1316449 (+) 1569 WP_280586324.1 sensor histidine kinase Regulator
  SOI79_RS06280 (SOI79_06280) pilR 1316473..1317885 (+) 1413 WP_284088141.1 sigma-54-dependent transcriptional regulator Regulator
  SOI79_RS06285 (SOI79_06285) ctpA 1317889..1319073 (-) 1185 WP_284088140.1 S41 family peptidase -
  SOI79_RS06290 (SOI79_06290) gpmI 1319089..1320636 (-) 1548 WP_206219160.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  SOI79_RS06295 (SOI79_06295) lptG 1320763..1321833 (-) 1071 WP_002121203.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52671.70 Da        Isoelectric Point: 6.3447

>NTDB_id=908519 SOI79_RS06280 WP_284088141.1 1316473..1317885(+) (pilR) [Acinetobacter pittii strain HUM14]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVQHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGETTLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVQQGKFRQDLFFRIHVMDIMLPPLRERGGDILL
LANHFIQKVCTEWGISSKQLTASAETYLLQQDFPGNVRELRNMIERAITLSDDECIDLTHLAPPLRGSSASPQIITKQQN
QTPTVQTHPKFPMEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEMGEEV

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=908519 SOI79_RS06280 WP_284088141.1 1316473..1317885(+) (pilR) [Acinetobacter pittii strain HUM14]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTGTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAGACACATCTTGCTTATCGGGTTGAACAGGCCAAACAGCTCTTTACTCAGTTTCATTACGATGCGTGCT
TGACCGATTTAAATCTACCTGACGGTAGTGGTTTAGAATTGGTCCAACATGTTTCTCAAACTTACCCACACACACCCATT
GCAGTCTTAACTGCATACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCTGGAGCTTTTGATTTTGTCAGCAAACC
GATTAACCAAATTCATTTAGATCAGTTGTTAAAAAAGGCGCTTAACCAGCCAAAACCAGAGCATGAATTTGGTGAAACAA
CTCTAGAGAATGACTTATTAATTGGGCGTTCACCACCTATACAAAACTTACGGACAGCTATTAAAAAAATAGCCCGCTCC
CAAGCTCCTGTATTTGTTACAGGCGAATCTGGTACGGGTAAAGAAGTTGTTGCTAATCTAATTCACCGCTTAAGCAACCG
CAGTGAAGGACCATTTATTGCAATTAACTGTGGAGCAATCCCAACTGAGCTCATGGAAAGTGAACTTTTCGGGCATAAAA
AAGGCAGTTTTACTGGAGCAACCCAAGACAAACAAGGTCTTATTTTATCGGCACACGGCGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCTTTAAGTATGCAAGTTAAATTACTTCGGGCAGTACAAGAGAAAAAGATTCGCCCTGTAGGTTCAGA
TCAGGAAATTGATGTTGATTTTCGAGTAATCAGTGCGAGTCACCAAGACTTAGATTTATTAGTTCAACAAGGTAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTTATGGATATTATGCTGCCGCCACTGCGTGAACGTGGTGGAGATATTTTGCTA
TTGGCCAATCATTTTATTCAAAAGGTTTGTACGGAATGGGGAATTTCAAGCAAGCAATTAACGGCGAGCGCTGAAACTTA
CTTATTGCAGCAAGACTTTCCGGGTAATGTTCGTGAATTAAGAAATATGATTGAACGAGCTATTACTTTAAGTGATGATG
AGTGTATTGATTTGACACACTTAGCACCTCCTCTTAGAGGGAGTAGTGCGAGTCCGCAAATCATAACGAAACAACAAAAT
CAAACACCGACTGTTCAGACTCACCCCAAATTTCCAATGGAAGGTTTAGAACGTTACTTAGAAAATATCGAAAAAGATAT
TTTACTGAATGCTCTGAACATGACGCATTGGAATCGAACTTTAGCGGCTAAAAAGTTAGGAATGACTTTCCGTTCTTTGC
GCTATCGACTCAAAAAGTTTGGCTTAGATACTGAAATGGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Response regulator receiver domain (Response_reg)

(8-116)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

86.047

100

0.866
  pilR Pseudomonas aeruginosa PAK

51.416

97.66

0.502