Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   SOI79_RS06275 Genome accession   NZ_CP139266
Coordinates   1314881..1316449 (+) Length   522 a.a.
NCBI ID   WP_280586324.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HUM14     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1309881..1321449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI79_RS06255 (SOI79_06255) hom 1310375..1311676 (+) 1302 WP_002121263.1 homoserine dehydrogenase -
  SOI79_RS06260 (SOI79_06260) thrC 1311731..1312870 (+) 1140 WP_002048893.1 threonine synthase -
  SOI79_RS06265 (SOI79_06265) pbpG 1312976..1314022 (-) 1047 WP_284088143.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  SOI79_RS06270 (SOI79_06270) gacA 1314235..1314870 (+) 636 WP_002121174.1 response regulator -
  SOI79_RS06275 (SOI79_06275) pilS 1314881..1316449 (+) 1569 WP_280586324.1 sensor histidine kinase Regulator
  SOI79_RS06280 (SOI79_06280) pilR 1316473..1317885 (+) 1413 WP_284088141.1 sigma-54-dependent transcriptional regulator Regulator
  SOI79_RS06285 (SOI79_06285) ctpA 1317889..1319073 (-) 1185 WP_284088140.1 S41 family peptidase -
  SOI79_RS06290 (SOI79_06290) gpmI 1319089..1320636 (-) 1548 WP_206219160.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59065.59 Da        Isoelectric Point: 6.2829

>NTDB_id=908518 SOI79_RS06275 WP_280586324.1 1314881..1316449(+) (pilS) [Acinetobacter pittii strain HUM14]
MQFPVNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPTLYSYTLLGYSLLSLVQLLCFKFIATQATRQ
LILFFVVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDAEQQNTLRNMIGKQTKRIDSIVQDTLGLARSERTYPIQIELNDFIKTLLDEDLSDVK
HAIQLKSSDLSLKLLFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=908518 SOI79_RS06275 WP_280586324.1 1314881..1316449(+) (pilS) [Acinetobacter pittii strain HUM14]
ATGCAATTTCCCGTAAACTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAACCCACTTTATATTCTT
ACACACTACTCGGCTATTCGCTCTTAAGCCTTGTTCAACTTTTATGCTTTAAGTTTATTGCTACTCAGGCCACAAGGCAG
CTCATTTTATTTTTTGTAGTTGATATTATCTGTCTGAGTTTACTTACATTTTCAGTAGGCGAACCCAATCTTCAACTCAG
CTTGCTCTATGTTATTGCCATATTTACTTCGGCCATTTTACTTAGCGCAAGAATGTCGTTGCTCATTACATTACTTGCAG
TCATTGCGGTTATTTACCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAATAGCGCCTTA
TTGGCCTTCTTGTTTTTTGTAGTACACGGAATCGGACAAATTGCGGTCCAGCGCTTTAAATTACTTGAAGCGCTAACTTT
CCATCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATCTTGGAACAAATTGAAGAAGGCTATTTAGTTC
TAGATGAAAACTACGACATTGTTTTAAGTAACCCAGCCGCCTGCTCTCTTTTAGGAATTCCACCTCAATTTGCCAGTGAA
AAATATCCCTTAGCAAAATGGCATGCTGACTTATTTGAAATTCTTAAGTTTGATAACTTAAAAGAAGGTGATCGATTTAT
TTTTGAGTCTCGACTGTCGGCTTACTCTATTAATATTAAAGTGCAACATCTTTTGGTGCCACAGCAAGCATTAACACTAC
TCATCTTACAAGATGCGCAGCAGATTAATCAGCAAGCTCAACAACTCAAACTTGCCGCTTTGGGACAACTCTCAGCAAGT
ATTGCACATGAGATCCGTAATCCTCTTGCAGCCATTGTTCAAGCAAATGAATTACTCAAAGATAGTGACGCGGAGCAGCA
AAATACTTTACGCAATATGATTGGCAAGCAAACGAAACGCATTGATAGTATTGTTCAAGACACCTTAGGACTCGCCCGCA
GTGAAAGAACGTATCCCATCCAGATTGAATTAAACGACTTTATAAAAACATTATTAGATGAAGATTTATCTGATGTTAAA
CATGCGATCCAGCTTAAAAGTTCTGATTTATCCTTAAAGCTATTGTTTGATGAAAAGCAACTCAGACAAGTGCTAATTAA
CCTTGTGAGGAATGCTCTACGACACAATGCACCCGATTCACCCTATGTTCTGATCAATATCCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAGCCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-250)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.828

100

0.948