Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SOI79_RS04340 Genome accession   NZ_CP139266
Coordinates   906372..906776 (-) Length   134 a.a.
NCBI ID   WP_019767972.1    Uniprot ID   A0A242T1I5
Organism   Acinetobacter pittii strain HUM14     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 901372..911776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI79_RS04310 (SOI79_04310) - 901456..901725 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  SOI79_RS04315 (SOI79_04315) rapZ 901722..902573 (-) 852 WP_002117179.1 RNase adapter RapZ -
  SOI79_RS04320 (SOI79_04320) panC 902597..903445 (-) 849 WP_002117191.1 pantoate--beta-alanine ligase -
  SOI79_RS04325 (SOI79_04325) panB 903449..904258 (-) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  SOI79_RS04330 (SOI79_04330) folK 904304..904786 (-) 483 WP_014208398.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  SOI79_RS04335 (SOI79_04335) pcnB 904783..906246 (-) 1464 WP_002117192.1 polynucleotide adenylyltransferase PcnB -
  SOI79_RS04340 (SOI79_04340) comEA 906372..906776 (-) 405 WP_019767972.1 ComEA family DNA-binding protein Machinery gene
  SOI79_RS04345 (SOI79_04345) mazG 906745..907551 (-) 807 WP_065388025.1 nucleoside triphosphate pyrophosphohydrolase -
  SOI79_RS04350 (SOI79_04350) - 907664..908437 (+) 774 WP_057077548.1 SDR family oxidoreductase -
  SOI79_RS04355 (SOI79_04355) relA 908484..910790 (-) 2307 WP_284088072.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15382.68 Da        Isoelectric Point: 10.5869

>NTDB_id=908507 SOI79_RS04340 WP_019767972.1 906372..906776(-) (comEA) [Acinetobacter pittii strain HUM14]
MQLSMNLWKNKHNIFIVLFWSLISSALVQAQSFDQNFKEWKAKQQMYDQKLSVQRPSHSNSPKSSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=908507 SOI79_RS04340 WP_019767972.1 906372..906776(-) (comEA) [Acinetobacter pittii strain HUM14]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAACACAATATTTTCATTGTTTTATTTTGGAGCCTGATCTCATCAGCCCT
AGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAAGCGAAACAGCAGATGTATGATCAGAAGTTGAGCGTGC
AGCGGCCCTCTCATTCTAATAGTCCAAAAAGTTCAGTTATGACTGATTCGTCAGGGCAAATTCACTTAAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCGATTGTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGTATTGGTCCAGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A242T1I5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

69.343

100

0.709
  comEA Acinetobacter baumannii D1279779

69.343

100

0.709
  comEA Acinetobacter baylyi ADP1

42.742

92.537

0.396