Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   SOI73_RS17245 Genome accession   NZ_CP139262
Coordinates   3611725..3612477 (+) Length   250 a.a.
NCBI ID   WP_002116684.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HUM1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3606725..3617477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI73_RS17230 (SOI73_17230) ponA 3607307..3609868 (-) 2562 WP_002116655.1 penicillin-binding protein PBP1a -
  SOI73_RS17235 (SOI73_17235) pilM 3610029..3611087 (+) 1059 WP_031945632.1 pilus assembly protein PilM Machinery gene
  SOI73_RS17240 (SOI73_17240) pilN 3611087..3611728 (+) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  SOI73_RS17245 (SOI73_17245) pilO 3611725..3612477 (+) 753 WP_002116684.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI73_RS17250 (SOI73_17250) pilP 3612488..3613015 (+) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  SOI73_RS17255 (SOI73_17255) pilQ 3613078..3615243 (+) 2166 WP_002116833.1 type IV pilus secretin PilQ Machinery gene
  SOI73_RS17260 (SOI73_17260) aroK 3615255..3615824 (+) 570 WP_002116987.1 shikimate kinase AroK -
  SOI73_RS17265 (SOI73_17265) aroB 3615853..3616935 (+) 1083 WP_002116776.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 28201.04 Da        Isoelectric Point: 4.8782

>NTDB_id=908487 SOI73_RS17245 WP_002116684.1 3611725..3612477(+) (pilO) [Acinetobacter pittii strain HUM1]
MSPDELHELSLEQAASKKKKITLEKFLQQFNTLDMNSYGSWPLSVKITCWIFIFFAVLALGYFVAIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQLQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
ITIEATGDYHAFGAFVSSIAALPRIVTMHDFVVEAAPVKDGKSDIPVLNYSIKAKTYRYMGAVENPEHQEKNASASSVAP
DSSTANTQPK

Nucleotide


Download         Length: 753 bp        

>NTDB_id=908487 SOI73_RS17245 WP_002116684.1 3611725..3612477(+) (pilO) [Acinetobacter pittii strain HUM1]
ATGAGTCCTGATGAACTTCATGAGCTGTCTTTAGAGCAAGCTGCATCTAAGAAAAAAAAGATCACCTTGGAAAAATTTCT
TCAGCAATTTAACACGCTCGATATGAACAGTTATGGCAGCTGGCCATTATCTGTGAAAATTACGTGTTGGATTTTTATTT
TCTTTGCCGTATTGGCTTTGGGGTATTTTGTTGCTATTCAGCCAAAGCTACAAGCAATTGATAATGCTCAAGCACAAGAA
AGTAATTTATTAAATGAGTTTCGAGAAAAAGACTCAAAATTACGCAACTTGCAGCAATACCAGCTTCAGCTTCAAGAGAT
GCAAGCCAACTTCAATCAGCAGTTAGAACAATTGCCAAAAGAAACCGAAATTCCAAGTTTAGTTGAAGATATTAACTTAA
CGGGGGTGAATTCTGGTCTGAAGTTTAAAAATATCCGCTTAGAAGATGAAGTAAAGCAGGAAATTTTTATTGAACAGCCT
ATTACTATCGAAGCAACTGGGGATTATCACGCTTTCGGTGCTTTTGTTAGCAGTATTGCGGCATTACCACGTATTGTGAC
AATGCATGATTTTGTTGTTGAAGCTGCTCCTGTTAAGGATGGTAAATCAGATATTCCTGTGCTTAATTATTCTATTAAAG
CAAAAACTTATCGCTATATGGGTGCTGTAGAAAATCCTGAACATCAGGAAAAAAATGCTTCGGCTTCCTCGGTAGCACCT
GATTCTTCTACTGCTAACACACAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

83.6

100

0.836
  comO Acinetobacter baylyi ADP1

70

96

0.672