Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   SOI73_RS17250 Genome accession   NZ_CP139262
Coordinates   3612488..3613015 (+) Length   175 a.a.
NCBI ID   WP_002116864.1    Uniprot ID   A0AAN4MGG3
Organism   Acinetobacter pittii strain HUM1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3607488..3618015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI73_RS17235 (SOI73_17235) pilM 3610029..3611087 (+) 1059 WP_031945632.1 pilus assembly protein PilM Machinery gene
  SOI73_RS17240 (SOI73_17240) pilN 3611087..3611728 (+) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  SOI73_RS17245 (SOI73_17245) pilO 3611725..3612477 (+) 753 WP_002116684.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI73_RS17250 (SOI73_17250) pilP 3612488..3613015 (+) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  SOI73_RS17255 (SOI73_17255) pilQ 3613078..3615243 (+) 2166 WP_002116833.1 type IV pilus secretin PilQ Machinery gene
  SOI73_RS17260 (SOI73_17260) aroK 3615255..3615824 (+) 570 WP_002116987.1 shikimate kinase AroK -
  SOI73_RS17265 (SOI73_17265) aroB 3615853..3616935 (+) 1083 WP_002116776.1 3-dehydroquinate synthase -
  SOI73_RS17270 (SOI73_17270) - 3616952..3617821 (+) 870 WP_196257329.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19265.32 Da        Isoelectric Point: 9.0270

>NTDB_id=908488 SOI73_RS17250 WP_002116864.1 3612488..3613015(+) (pilP) [Acinetobacter pittii strain HUM1]
MKLKQFSLSILACLALAGCDSRIDAVNQQMADIRNQPPQAIEPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSMRNSRGQVMALIQTPDQQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=908488 SOI73_RS17250 WP_002116864.1 3612488..3613015(+) (pilP) [Acinetobacter pittii strain HUM1]
ATGAAACTTAAACAATTTTCTCTTTCTATTTTGGCATGTTTAGCTTTAGCTGGATGCGACTCTAGAATCGATGCTGTAAA
TCAGCAAATGGCCGATATACGTAATCAGCCACCACAAGCCATAGAACCAGCGCCTGTTTTTACGCCTGTGCCACAATTTA
ATTATGCAGCCCATCAGTTAAAGAGCCCATTTTTACCAAGCTCACTTGCTGCTGAGCTCAAAATTATGGCGGGGAAACGA
GTATATCCGAATTTCTCACGTGCACCACAGCCACTCGAAAGCTATGCATTAGAGTCCTTAAATATGAAAGGAAGTATGCG
TAACAGCCGCGGGCAAGTCATGGCTCTGATCCAAACACCTGATCAACAAATTGAGCGAGTACAGGTAGGGAATTATATCG
GGATGAATCAAGGTCGAATTACCCATATTGGTCCTACTCAGATTGATTTGGTGGAGATTGTTCCTGATGGGCGAGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

88.571

100

0.886
  comL Acinetobacter baylyi ADP1

75.152

94.286

0.709