Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SOI73_RS12280 Genome accession   NZ_CP139262
Coordinates   2561361..2561765 (-) Length   134 a.a.
NCBI ID   WP_005079001.1    Uniprot ID   A0A022J074
Organism   Acinetobacter pittii strain HUM1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2556361..2566765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI73_RS12250 (SOI73_12250) - 2556445..2556714 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  SOI73_RS12255 (SOI73_12255) rapZ 2556711..2557562 (-) 852 WP_002117179.1 RNase adapter RapZ -
  SOI73_RS12260 (SOI73_12260) panC 2557586..2558434 (-) 849 WP_002117191.1 pantoate--beta-alanine ligase -
  SOI73_RS12265 (SOI73_12265) panB 2558438..2559247 (-) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  SOI73_RS12270 (SOI73_12270) folK 2559293..2559775 (-) 483 WP_044430983.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  SOI73_RS12275 (SOI73_12275) pcnB 2559772..2561235 (-) 1464 WP_005079000.1 polynucleotide adenylyltransferase PcnB -
  SOI73_RS12280 (SOI73_12280) comEA 2561361..2561765 (-) 405 WP_005079001.1 ComEA family DNA-binding protein Machinery gene
  SOI73_RS12285 (SOI73_12285) mazG 2561734..2562540 (-) 807 WP_005079002.1 nucleoside triphosphate pyrophosphohydrolase -
  SOI73_RS12290 (SOI73_12290) - 2562653..2563426 (+) 774 WP_086376475.1 SDR family oxidoreductase -
  SOI73_RS12295 (SOI73_12295) relA 2563473..2565779 (-) 2307 WP_002117181.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15484.79 Da        Isoelectric Point: 10.5869

>NTDB_id=908466 SOI73_RS12280 WP_005079001.1 2561361..2561765(-) (comEA) [Acinetobacter pittii strain HUM1]
MQLSMNLWKNKHNIFIILFWSLISSTSVQAQSFDQNFKEWKAKQQRYDQKLSMQHSSHSNSPKSSVMTDLSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKMRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=908466 SOI73_RS12280 WP_005079001.1 2561361..2561765(-) (comEA) [Acinetobacter pittii strain HUM1]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAGCACAATATTTTCATTATTTTATTTTGGAGCCTGATCTCATCAACGTC
AGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCTAAACAGCAGAGGTATGATCAGAAGTTGAGCATGC
AGCACTCCTCTCATTCTAACAGTCCAAAAAGTTCAGTTATGACTGATTTGTCAGGGCAAATACACTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCAATTGTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCAGCCATTTTTGAAAAGAATAAAATGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(73-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A022J074

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

70.073

100

0.716
  comEA Acinetobacter baumannii D1279779

69.343

100

0.709
  comEA Acinetobacter baylyi ADP1

43.548

92.537

0.403