Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   SOI70_RS15545 Genome accession   NZ_CP139258
Coordinates   3239834..3241246 (+) Length   470 a.a.
NCBI ID   WP_005079471.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HUM3     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3234834..3246246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI70_RS15525 (SOI70_15545) thrC 3235092..3236231 (+) 1140 WP_002048893.1 threonine synthase -
  SOI70_RS15530 (SOI70_15550) pbpG 3236336..3237382 (-) 1047 WP_005065720.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  SOI70_RS15535 (SOI70_15555) gacA 3237595..3238230 (+) 636 WP_002121174.1 response regulator -
  SOI70_RS15540 (SOI70_15560) pilS 3238241..3239809 (+) 1569 WP_213074231.1 sensor histidine kinase Regulator
  SOI70_RS15545 (SOI70_15565) pilR 3239834..3241246 (+) 1413 WP_005079471.1 sigma-54-dependent transcriptional regulator Regulator
  SOI70_RS15550 (SOI70_15570) ctpA 3241250..3242434 (-) 1185 WP_005079474.1 S41 family peptidase -
  SOI70_RS15555 (SOI70_15575) gpmI 3242450..3243997 (-) 1548 WP_005079475.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  SOI70_RS15560 (SOI70_15580) lptG 3244124..3245194 (-) 1071 WP_002121203.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52654.70 Da        Isoelectric Point: 6.3452

>NTDB_id=908449 SOI70_RS15545 WP_005079471.1 3239834..3241246(+) (pilR) [Acinetobacter pittii strain HUM3]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRIEQAKQLFTQFHYDACLTDLNLPDGSGLELVQHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGETTLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVQQGKFRQDLFFRIHVMDIMLPPLRDRGGDILL
LANHFIQKVCTEWGISSKQLTASAETYLLQQDFPGNVRELRNMIERAITLSDDESIDLTHLAPPLRGSSVSPQIVTKQLN
QTPTVQTHPKFPMEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEMGEEV

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=908449 SOI70_RS15545 WP_005079471.1 3239834..3241246(+) (pilR) [Acinetobacter pittii strain HUM3]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTGTTAATGCAAATGACTCTTGCACG
AATGGGAATTAAGACACATCTTGCTTATCGGATTGAACAGGCCAAACAGCTCTTTACTCAGTTTCATTACGATGCGTGCT
TGACCGATTTAAATCTACCTGATGGTAGTGGCTTAGAATTGGTCCAACATGTTTCTCAAACTTACCCACACACACCCATT
GCAGTCTTAACCGCATACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCGGGAGCTTTTGATTTTGTCAGCAAACC
GATTAACCAAATTCATTTAGATCAATTGTTAAAAAAGGCGCTTAACCAGCCAAAACCAGAGCATGAGTTCGGTGAAACAA
CATTAGAAAATGACTTATTAATTGGGCGTTCACCACCTATACAAAACTTACGGACAGCTATTAAAAAAATAGCCCGCTCC
CAAGCACCTGTGTTTGTTACAGGTGAGTCTGGTACGGGTAAAGAAGTCGTTGCTAATCTGATTCACCGCTTAAGCAACCG
CAGTGAAGGACCATTTATTGCAATTAACTGTGGAGCAATCCCAACTGAGCTCATGGAAAGTGAACTTTTCGGGCATAAAA
AAGGGAGCTTTACTGGCGCGACTCAAGATAAACAAGGTCTTATTTTATCAGCACACGGCGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCTTTAAGTATGCAAGTTAAATTGCTTCGGGCAGTACAAGAGAAAAAGATTCGCCCTGTAGGTTCAGA
TCAGGAAATTGATGTTGATTTTCGAGTAATCAGTGCCAGTCACCAAGACTTAGATTTATTAGTTCAACAAGGTAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTTATGGATATTATGTTGCCGCCACTACGTGACCGTGGTGGAGATATTTTGCTA
TTGGCCAATCATTTTATTCAAAAGGTTTGTACGGAATGGGGAATTTCAAGCAAGCAATTAACGGCGAGCGCTGAAACTTA
CTTATTGCAGCAAGACTTTCCGGGTAATGTTCGTGAATTAAGAAATATGATTGAACGGGCTATTACTTTAAGTGATGATG
AGTCCATTGATTTAACACACTTAGCGCCTCCTCTTAGAGGCAGTAGCGTGAGCCCGCAAATCGTAACGAAACAACTAAAT
CAAACACCGACTGTTCAGACTCATCCAAAATTTCCAATGGAAGGTTTAGAACGCTACCTAGAAAATATCGAAAAAGATAT
TTTACTAAATGCTCTGAACATGACGCATTGGAATCGAACTTTGGCCGCTAAAAAGCTAGGAATGACATTCCGTTCTTTAC
GCTATCGACTCAAAAAATTTGGCTTAGATACCGAAATGGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

85.624

100

0.862
  pilR Pseudomonas aeruginosa PAK

50.877

97.021

0.494