Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   SOI70_RS15540 Genome accession   NZ_CP139258
Coordinates   3238241..3239809 (+) Length   522 a.a.
NCBI ID   WP_213074231.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HUM3     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3233241..3244809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI70_RS15520 (SOI70_15540) hom 3233736..3235037 (+) 1302 WP_002121263.1 homoserine dehydrogenase -
  SOI70_RS15525 (SOI70_15545) thrC 3235092..3236231 (+) 1140 WP_002048893.1 threonine synthase -
  SOI70_RS15530 (SOI70_15550) pbpG 3236336..3237382 (-) 1047 WP_005065720.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  SOI70_RS15535 (SOI70_15555) gacA 3237595..3238230 (+) 636 WP_002121174.1 response regulator -
  SOI70_RS15540 (SOI70_15560) pilS 3238241..3239809 (+) 1569 WP_213074231.1 sensor histidine kinase Regulator
  SOI70_RS15545 (SOI70_15565) pilR 3239834..3241246 (+) 1413 WP_005079471.1 sigma-54-dependent transcriptional regulator Regulator
  SOI70_RS15550 (SOI70_15570) ctpA 3241250..3242434 (-) 1185 WP_005079474.1 S41 family peptidase -
  SOI70_RS15555 (SOI70_15575) gpmI 3242450..3243997 (-) 1548 WP_005079475.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59105.69 Da        Isoelectric Point: 6.2823

>NTDB_id=908448 SOI70_RS15540 WP_213074231.1 3238241..3239809(+) (pilS) [Acinetobacter pittii strain HUM3]
MQFPLNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPTLYSYTLLGYSLLSLLQLLCFKFIATQATRQ
LILFFVVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
IYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDVEQQNTLRNMIGKQTKRIDSIVQDTLGLARSERTYPIQIELNNFIKTLLDEDLSDVK
HAIQLKSSDLSLKLLFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=908448 SOI70_RS15540 WP_213074231.1 3238241..3239809(+) (pilS) [Acinetobacter pittii strain HUM3]
ATGCAATTTCCCCTAAACTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAACCCACTTTATATTCTT
ACACACTACTCGGCTATTCGCTCTTAAGCCTTCTTCAACTTTTATGTTTTAAGTTTATTGCAACTCAGGCAACAAGGCAG
CTCATTTTATTTTTTGTAGTTGATATTATCTGTCTGAGTTTACTTACATTTTCAGTAGGCGAACCCAATCTTCAACTCAG
CTTGCTCTATGTTATTGCCATATTTACTTCGGCTATTTTACTTAGCGCAAGAATGTCGTTGCTCATTACATTACTTGCAG
TCATTGCGGTTATTTACCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAATAGCGCTTTA
TTGGCCTTCTTGTTTTTTGTAGTACACGGAATCGGGCAAATTGCGGTCCAGCGCTTTAAATTACTTGAAGCACTAACTTT
CCATCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATCTTGGAACAAATTGAAGAGGGCTATTTAGTTC
TAGATGAAAACTACGACATTGTTTTAAGTAATCCAGCCGCCTGCTCTCTTTTAGGAATTCCACCTCAATTTGCCAGTGAA
ATATATCCCTTAGCAAAATGGCATGCTGACTTATTTGAAATATTAAAGTTTGATAATTTAAAAGAAGGTGATCGATTTAT
TTTTGAGTCCCGACTGTCGGCTTATTCTATTAATATTAAAGTGCAACATCTTTTGGTGCCGCAACAAGCATTAACACTAC
TCATCTTACAAGATGCGCAGCAGATTAATCAGCAAGCTCAACAACTCAAACTTGCCGCTTTAGGACAACTCTCAGCAAGT
ATTGCACATGAGATCCGTAATCCTCTTGCAGCCATTGTTCAAGCAAATGAATTACTCAAAGACAGTGATGTGGAACAGCA
AAATACTTTACGCAATATGATTGGCAAGCAAACGAAACGCATTGATAGTATTGTTCAAGACACCTTAGGACTTGCCCGCA
GTGAAAGAACGTATCCCATCCAGATCGAATTAAACAACTTCATAAAAACATTATTAGATGAAGATTTATCTGATGTTAAA
CATGCAATCCAGCTTAAAAGTTCTGATTTATCCTTAAAGCTATTGTTTGATGAAAAGCAACTCAGACAAGTGCTAATTAA
TCTTGTTAGGAATGCTCTACGACACAATGCACCCGATTCACCCTATGTTCTGATCAATATCCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGTCCAATAATATATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

PAS domain (PAS_8)

(201-255)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.636

100

0.946