Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   SOI72_RS03270 Genome accession   NZ_CP139255
Coordinates   663590..663973 (+) Length   127 a.a.
NCBI ID   WP_000389061.1    Uniprot ID   -
Organism   Acinetobacter pittii strain MCR16048     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 658590..668973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI72_RS03260 (SOI72_03260) nolF 661488..662597 (-) 1110 WP_078210303.1 efflux RND transporter periplasmic adaptor subunit -
  SOI72_RS03265 (SOI72_03265) - 662667..663305 (-) 639 WP_005072790.1 hypothetical protein -
  SOI72_RS03270 (SOI72_03270) pilG 663590..663973 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  SOI72_RS03275 (SOI72_03275) pilH 663996..664358 (+) 363 WP_002116220.1 response regulator -
  SOI72_RS03280 (SOI72_03280) pilI 664419..664955 (+) 537 WP_002116439.1 chemotaxis protein CheW -
  SOI72_RS03285 (SOI72_03285) pilJ 664998..667076 (+) 2079 WP_005072794.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14200.23 Da        Isoelectric Point: 4.5762

>NTDB_id=908376 SOI72_RS03270 WP_000389061.1 663590..663973(+) (pilG) [Acinetobacter pittii strain MCR16048]
MEDAFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSQNYQ
NIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVSS

Nucleotide


Download         Length: 384 bp        

>NTDB_id=908376 SOI72_RS03270 WP_000389061.1 663590..663973(+) (pilG) [Acinetobacter pittii strain MCR16048]
ATGGAAGATGCATTCCAAAATCTGAAAGTAATGGTGATTGATGACTCAAAAACCATTCGCCGTACAGCGGAAACCTTATT
ACAGCGTGAAGGCTGTGAAGTGATTACTGCTGTGGATGGATTTGAAGCTTTGTCCAAAATTGCAGAAGCAAATCCGGATA
TTGTTTTTGTCGATATCATGATGCCTCGTTTAGATGGTTATCAAACTTGTGCTTTGATAAAAAACTCTCAAAATTATCAG
AATATTCCCGTTATCATGCTCTCTAGTAAAGATGGTTTATTTGATCAGGCAAAAGGGCGTGTGGTAGGTTCAGATGAATA
CTTGACGAAACCTTTTAGCAAAGATGAATTGTTAAACGCGATTCGTAATCATGTAAGTTCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

100

100

1
  vicR Streptococcus mutans UA159

42.735

92.126

0.394
  pilH Synechocystis sp. PCC 6803

41.593

88.976

0.37