Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SOI71_RS15240 Genome accession   NZ_CP139251
Coordinates   3211634..3212038 (-) Length   134 a.a.
NCBI ID   WP_086400252.1    Uniprot ID   -
Organism   Acinetobacter pittii strain MCR53     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3206634..3217038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI71_RS15210 (SOI71_15200) - 3206718..3206987 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  SOI71_RS15215 (SOI71_15205) rapZ 3206984..3207835 (-) 852 WP_005066272.1 RNase adapter RapZ -
  SOI71_RS15220 (SOI71_15210) panC 3207859..3208707 (-) 849 WP_104074958.1 pantoate--beta-alanine ligase -
  SOI71_RS15225 (SOI71_15215) panB 3208711..3209520 (-) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  SOI71_RS15230 (SOI71_15220) folK 3209566..3210048 (-) 483 WP_104074959.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  SOI71_RS15235 (SOI71_15225) pcnB 3210045..3211508 (-) 1464 WP_044099462.1 polynucleotide adenylyltransferase PcnB -
  SOI71_RS15240 (SOI71_15230) comEA 3211634..3212038 (-) 405 WP_086400252.1 ComEA family DNA-binding protein Machinery gene
  SOI71_RS15245 (SOI71_15235) mazG 3212007..3212813 (-) 807 WP_104074960.1 nucleoside triphosphate pyrophosphohydrolase -
  SOI71_RS15250 (SOI71_15240) - 3212926..3213699 (+) 774 WP_104074961.1 SDR family oxidoreductase -
  SOI71_RS15255 (SOI71_15245) - 3214222..3215535 (+) 1314 WP_063099670.1 COG3014 family protein -
  SOI71_RS15260 (SOI71_15250) - 3215555..3215965 (+) 411 WP_063098121.1 YcfL family protein -
  SOI71_RS15265 (SOI71_15255) lpoB 3216019..3216621 (+) 603 WP_063098120.1 penicillin-binding protein activator LpoB -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15491.76 Da        Isoelectric Point: 10.6823

>NTDB_id=908342 SOI71_RS15240 WP_086400252.1 3211634..3212038(-) (comEA) [Acinetobacter pittii strain MCR53]
MQFSMNLWKNKHNIFIILFWSLISSTLVQAQSFDQNFKEWKAKQQRYDQKLSMQRSAHSNSPKSSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=908342 SOI71_RS15240 WP_086400252.1 3211634..3212038(-) (comEA) [Acinetobacter pittii strain MCR53]
ATGCAGTTCAGCATGAATCTTTGGAAGAATAAGCACAATATTTTCATTATTTTATTTTGGAGCCTGATCTCATCGACGCT
AGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCTAAACAGCAGAGGTATGATCAGAAGTTGAGCATGC
AGCGCTCCGCTCATTCTAATAGCCCAAAAAGTTCAGTTATGACTGATTCGTCAGGGCAAATTCACTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCAATTGTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAATGTAAAGGGCATTGGTCCAGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

68.613

100

0.701
  comEA Acinetobacter baumannii D1279779

68.613

100

0.701
  comEA Acinetobacter baylyi ADP1

43.548

92.537

0.403