Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   SOI76_RS17365 Genome accession   NZ_CP139249
Coordinates   3626411..3627823 (+) Length   470 a.a.
NCBI ID   WP_104080710.1    Uniprot ID   -
Organism   Acinetobacter pittii strain MCR8900     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3621411..3632823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI76_RS17345 (SOI76_17345) thrC 3621668..3622807 (+) 1140 WP_002048893.1 threonine synthase -
  SOI76_RS17350 (SOI76_17350) pbpG 3622913..3623959 (-) 1047 WP_146065070.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  SOI76_RS17355 (SOI76_17355) gacA 3624172..3624807 (+) 636 WP_002121174.1 response regulator -
  SOI76_RS17360 (SOI76_17360) pilS 3624818..3626386 (+) 1569 WP_205668481.1 sensor histidine kinase Regulator
  SOI76_RS17365 (SOI76_17365) pilR 3626411..3627823 (+) 1413 WP_104080710.1 sigma-54-dependent transcriptional regulator Regulator
  SOI76_RS17370 (SOI76_17370) ctpA 3627827..3629011 (-) 1185 WP_104080709.1 S41 family peptidase -
  SOI76_RS17375 (SOI76_17375) gpmI 3629027..3630574 (-) 1548 WP_017400161.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  SOI76_RS17380 (SOI76_17380) lptG 3630701..3631771 (-) 1071 WP_104080708.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52685.77 Da        Isoelectric Point: 6.3451

>NTDB_id=908313 SOI76_RS17365 WP_104080710.1 3626411..3627823(+) (pilR) [Acinetobacter pittii strain MCR8900]
MAEQRPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVQHVSETYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFSETTLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFVAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLTMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVQQGKFRQDLFFRIHVMDIMLPPLRDRGGDILL
LANHFIQKVCTEWGISSKQLTASAETYLLQQDFPGNVRELRNMIERAITLSDEDCIDLTHLAPPLRGSSVSPQIVTKQLN
QAPTVQTHPKFPMEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEMGEEV

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=908313 SOI76_RS17365 WP_104080710.1 3626411..3627823(+) (pilR) [Acinetobacter pittii strain MCR8900]
ATGGCAGAACAGCGACCACTCGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTGTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAGCTTTTTACTCAGTTTCATTACGATGCATGCT
TGACCGATTTAAATCTACCTGACGGTAGTGGCTTAGAATTGGTTCAACATGTTTCTGAAACTTACCCACACACACCCATT
GCAGTCTTAACTGCATACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCGGGAGCTTTTGATTTTGTCAGCAAACC
GATTAACCAAATTCATTTAGATCAGCTATTAAAAAAAGCGCTTAACCAGCCAAAACCAGAGCATGAGTTTAGTGAAACAA
CTCTAGAGAATGACTTATTAATTGGGCGTTCACCACCTATACAAAACTTACGGACAGCTATTAAAAAAATAGCCCGCTCC
CAAGCTCCTGTATTTGTTACAGGCGAGTCTGGTACGGGCAAAGAAGTTGTTGCGAATCTGATTCACCGCTTAAGCAACCG
TAGCGAAGGGCCATTTGTTGCTATTAACTGCGGAGCAATCCCAACCGAGCTCATGGAAAGTGAACTTTTCGGGCATAAAA
AAGGTAGTTTTACTGGCGCGACTCAAGACAAACAAGGTCTGATTTTATCGGCACACGGCGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCGCTAACTATGCAGGTTAAATTGCTGCGGGCTGTGCAAGAGAAAAAGATACGCCCTGTAGGTTCAGA
TCAGGAAATTGATGTTGATTTTCGAGTAATTAGTGCGAGTCACCAAGATTTAGATTTGTTAGTCCAACAAGGTAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTTATGGATATTATGTTGCCGCCACTGCGTGACCGTGGTGGAGATATTTTGCTA
TTGGCCAATCATTTTATTCAAAAGGTTTGTACGGAATGGGGAATTTCAAGCAAGCAATTAACGGCGAGCGCTGAAACTTA
CTTATTGCAGCAAGACTTTCCGGGTAATGTTCGTGAATTAAGAAATATGATTGAACGAGCTATTACTTTAAGTGATGAGG
ATTGCATTGATTTGACACACTTAGCACCTCCTCTTAGAGGCAGTAGCGTGAGCCCGCAAATCGTAACGAAACAACTAAAT
CAAGCACCGACTGTTCAGACTCATCCAAAATTTCCAATGGAAGGTTTAGAACGTTATTTAGAAAATATCGAAAAAGATAT
TTTATTGAATGCGCTAAACATGACGCATTGGAATCGAACTTTGGCGGCTAAAAAGTTAGGAATGACATTCCGTTCTTTGC
GTTACCGACTCAAAAAGTTTGGCTTAGATACCGAAATGGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Response regulator receiver domain (Response_reg)

(8-116)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

84.567

100

0.851
  pilR Pseudomonas aeruginosa PAK

50.649

98.298

0.498