Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   SOI76_RS17360 Genome accession   NZ_CP139249
Coordinates   3624818..3626386 (+) Length   522 a.a.
NCBI ID   WP_205668481.1    Uniprot ID   -
Organism   Acinetobacter pittii strain MCR8900     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3619818..3631386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI76_RS17340 (SOI76_17340) hom 3620312..3621613 (+) 1302 WP_002121263.1 homoserine dehydrogenase -
  SOI76_RS17345 (SOI76_17345) thrC 3621668..3622807 (+) 1140 WP_002048893.1 threonine synthase -
  SOI76_RS17350 (SOI76_17350) pbpG 3622913..3623959 (-) 1047 WP_146065070.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  SOI76_RS17355 (SOI76_17355) gacA 3624172..3624807 (+) 636 WP_002121174.1 response regulator -
  SOI76_RS17360 (SOI76_17360) pilS 3624818..3626386 (+) 1569 WP_205668481.1 sensor histidine kinase Regulator
  SOI76_RS17365 (SOI76_17365) pilR 3626411..3627823 (+) 1413 WP_104080710.1 sigma-54-dependent transcriptional regulator Regulator
  SOI76_RS17370 (SOI76_17370) ctpA 3627827..3629011 (-) 1185 WP_104080709.1 S41 family peptidase -
  SOI76_RS17375 (SOI76_17375) gpmI 3629027..3630574 (-) 1548 WP_017400161.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59015.62 Da        Isoelectric Point: 6.4991

>NTDB_id=908312 SOI76_RS17360 WP_205668481.1 3624818..3626386(+) (pilS) [Acinetobacter pittii strain MCR8900]
MQFPVNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDTSLQQPALYSYTLLGYSILSLIQLLCFKFIATQATRQ
LILFFVVDVICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDHLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDVEQQNTLRNMIGKQTKRIDSIVQDTLGLARSERTYPIQIELNDFIKTLLDEDLSDVK
HAIELKSSNLSLKLLFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIACPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=908312 SOI76_RS17360 WP_205668481.1 3624818..3626386(+) (pilS) [Acinetobacter pittii strain MCR8900]
ATGCAATTTCCCGTAAACTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACACTAGTCTACAACAACCCGCTTTATATTCTT
ACACACTACTCGGCTATTCAATCTTAAGCCTTATTCAACTTTTATGTTTTAAGTTTATTGCCACTCAGGCAACAAGGCAG
CTCATTTTATTTTTTGTAGTTGATGTTATTTGCCTGAGTTTACTTACATTTTCTGTAGGTGAACCCAATCTTCAACTCAG
CTTGCTCTATGTTATTGCCATATTTACTTCGGCCATTTTACTTAGCGCAAGAATGTCGTTGCTCATTACATTACTTGCAG
TCATTGCGGTTATTTACCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAATAGCGCTTTA
TTAGCCTTCTTGTTTTTTGTAGTACACGGAATCGGACAAATTGCGGTCCAGCGCTTTAAATTACTTGAAGCGCTGACTTT
CCATCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATCTTGGAACAAATTGAAGAGGGCTATTTAGTCC
TAGATGAAAACTACGATATTGTTTTAAGTAATCCAGCCGCCTGCTCTCTTTTAGGAATTCCACCTCAATTTGCCAGTGAA
AAATATCCCTTAGCAAAATGGCATGCTGACTTATTTGAAATTCTTAAGTTTGATCATTTAAAAGAAGGTGATCGATTTAT
TTTTGAGTCCCGACTGTCGGCTTATTCTATTAATATTAAAGTGCAGCATCTTTTAGTACCACAACAAGCATTAACACTAC
TTATCTTACAAGATGCACAGCAGATTAATCAGCAAGCTCAACAACTCAAACTTGCCGCTTTAGGGCAACTCTCAGCAAGT
ATTGCACATGAAATCCGCAATCCTCTTGCAGCCATTGTTCAAGCAAATGAATTACTCAAAGATAGTGATGTGGAGCAGCA
AAATACTTTACGCAATATGATTGGAAAGCAAACGAAACGCATTGATAGTATTGTTCAAGACACTTTAGGACTTGCCCGCA
GTGAAAGAACGTATCCGATCCAGATTGAACTAAACGACTTCATAAAAACGTTATTAGATGAAGATTTATCTGATGTTAAA
CATGCGATCGAGCTTAAAAGTTCTAATTTATCCTTAAAGCTATTGTTTGATGAAAAGCAACTCAGACAAGTCCTCATTAA
CCTTGTTAGGAATGCTCTACGCCACAATGCACCCGACTCTCCCTATGTTCTGATCAATATTCACTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCCGAATAGCGTGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-251)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

93.678

100

0.937