Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   SOI76_RS17200 Genome accession   NZ_CP139249
Coordinates   3593801..3594127 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter pittii strain MCR8900     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3588801..3599127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI76_RS17180 (SOI76_17180) - 3588908..3589534 (-) 627 WP_104080731.1 FHA domain-containing protein -
  SOI76_RS17185 (SOI76_17185) gspD 3589575..3591845 (-) 2271 WP_104080730.1 type II secretion system secretin GspD -
  SOI76_RS17190 (SOI76_17190) - 3591887..3592723 (-) 837 WP_104080729.1 type II secretion system protein N -
  SOI76_RS17195 (SOI76_17195) gspN 3592723..3593466 (-) 744 WP_032055592.1 type II secretion system protein N -
  SOI76_RS17200 (SOI76_17200) hns 3593801..3594127 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  SOI76_RS17205 (SOI76_17205) - 3594322..3594762 (-) 441 WP_032055594.1 acyl-CoA thioesterase -
  SOI76_RS17210 (SOI76_17210) - 3594770..3595963 (-) 1194 WP_205668484.1 heme biosynthesis protein HemY -
  SOI76_RS17215 (SOI76_17215) - 3595973..3596815 (-) 843 WP_104080728.1 hypothetical protein -
  SOI76_RS17220 (SOI76_17220) hemD 3596824..3597591 (-) 768 WP_104080727.1 uroporphyrinogen-III synthase -
  SOI76_RS17225 (SOI76_17225) hemC 3597595..3598512 (-) 918 WP_205668483.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=908310 SOI76_RS17200 WP_000801427.1 3593801..3594127(-) (hns) [Acinetobacter pittii strain MCR8900]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=908310 SOI76_RS17200 WP_000801427.1 3593801..3594127(-) (hns) [Acinetobacter pittii strain MCR8900]
ATGAAGCCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTAGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1