Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   SOI76_RS12320 Genome accession   NZ_CP139249
Coordinates   2581372..2582079 (+) Length   235 a.a.
NCBI ID   WP_005070320.1    Uniprot ID   A0A009I7W0
Organism   Acinetobacter pittii strain MCR8900     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2576372..2587079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI76_RS12300 (SOI76_12300) - 2579213..2580022 (+) 810 WP_104079455.1 M23 family metallopeptidase -
  SOI76_RS12305 (SOI76_12305) - 2580019..2580384 (-) 366 WP_104079454.1 GNAT family N-acetyltransferase -
  SOI76_RS12310 (SOI76_12310) - 2580511..2580933 (-) 423 WP_002121528.1 OsmC family protein -
  SOI76_RS12315 (SOI76_12315) - 2581012..2581131 (-) 120 WP_002121587.1 hypothetical protein -
  SOI76_RS12320 (SOI76_12320) crp 2581372..2582079 (+) 708 WP_005070320.1 cAMP-activated global transcriptional regulator CRP Regulator
  SOI76_RS12325 (SOI76_12325) tas 2582239..2583288 (+) 1050 WP_057074205.1 NADP(H)-dependent aldo-keto reductase -
  SOI76_RS12330 (SOI76_12330) - 2583343..2584122 (-) 780 WP_057074204.1 M48 family metallopeptidase -
  SOI76_RS12335 (SOI76_12335) - 2584238..2584555 (-) 318 WP_104079453.1 hypothetical protein -
  SOI76_RS12340 (SOI76_12340) purA 2584677..2585996 (-) 1320 WP_002121613.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26526.09 Da        Isoelectric Point: 4.6573

>NTDB_id=908296 SOI76_RS12320 WP_005070320.1 2581372..2582079(+) (crp) [Acinetobacter pittii strain MCR8900]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEENTVSDDDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=908296 SOI76_RS12320 WP_005070320.1 2581372..2582079(+) (crp) [Acinetobacter pittii strain MCR8900]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGATGATGAACGTGAAATTGTTGTTGCGTATTTAAATCCGGGCGATTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCCGAAGTTCGTACTCGCGATGTCTGCGAAATTGCAGA
AATTTCATATGACAACTTCCACGAACTTAGCAAACAATATCCAGATTTAAGTTATGCTGTTTTTGCACAATTAGTTCGCC
GTCTAAAAAATACGACACGTAAAATGACAGATCTTGCGTTCATTGATGTGTCTGGTCGTATTGCACGTTGTTTAATCGAT
CTATCTTCTCAGCCAGAAGCAATGATTTTGCCAAACGGTCGTCAAATTCGTATTACTCGTCAAGAAATTGGCCGTATTGT
GGGATGTTCACGTGAGATGGTTGGCCGTGTACTCAAAACCTTAGAAGATCAAGGTATGATCCAAACTGATGGTAAAGCCA
TTCTTATTTTTGATGCATCATTAGAAGAAAACACTGTTTCTGATGATGACTACGACGATGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009I7W0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

97.447

100

0.974
  crp Vibrio cholerae strain A1552

47.087

87.66

0.413
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404