Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SOI69_RS12260 Genome accession   NZ_CP139248
Coordinates   2610364..2610768 (-) Length   134 a.a.
NCBI ID   WP_068612364.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HCG18     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2605364..2615768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI69_RS12230 (SOI69_12230) - 2605448..2605717 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  SOI69_RS12235 (SOI69_12235) rapZ 2605714..2606565 (-) 852 WP_005066272.1 RNase adapter RapZ -
  SOI69_RS12240 (SOI69_12240) panC 2606589..2607437 (-) 849 WP_320539416.1 pantoate--beta-alanine ligase -
  SOI69_RS12245 (SOI69_12245) panB 2607441..2608250 (-) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  SOI69_RS12250 (SOI69_12250) folK 2608296..2608778 (-) 483 WP_014208398.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  SOI69_RS12255 (SOI69_12255) pcnB 2608775..2610238 (-) 1464 WP_002117192.1 polynucleotide adenylyltransferase PcnB -
  SOI69_RS12260 (SOI69_12260) comEA 2610364..2610768 (-) 405 WP_068612364.1 ComEA family DNA-binding protein Machinery gene
  SOI69_RS12265 (SOI69_12265) mazG 2610737..2611543 (-) 807 WP_068612366.1 nucleoside triphosphate pyrophosphohydrolase -
  SOI69_RS12270 (SOI69_12270) - 2611656..2612429 (+) 774 WP_068612368.1 SDR family oxidoreductase -
  SOI69_RS12275 (SOI69_12275) relA 2612476..2614782 (-) 2307 WP_002117181.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15383.60 Da        Isoelectric Point: 10.5869

>NTDB_id=908239 SOI69_RS12260 WP_068612364.1 2610364..2610768(-) (comEA) [Acinetobacter pittii strain HCG18]
MQLSMNLWKNKHNIFIVLFWSLISSTFVQAQSFDQNFKEWKAKQQRYDQKLSIQHASHSSVPKSSAMTDSSGQVHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=908239 SOI69_RS12260 WP_068612364.1 2610364..2610768(-) (comEA) [Acinetobacter pittii strain HCG18]
ATGCAGCTCAGCATGAACCTTTGGAAGAATAAGCACAATATTTTCATTGTTTTATTTTGGAGCCTGATTTCTTCAACCTT
TGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCGAAACAGCAGAGGTATGATCAGAAGTTGAGCATAC
AACACGCTTCTCATTCTAGTGTTCCAAAAAGCTCAGCCATGACTGACTCTTCGGGACAAGTTCATTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCAATTGTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCAGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

67.153

100

0.687
  comEA Acinetobacter baumannii D1279779

67.153

100

0.687
  comEA Acinetobacter baylyi ADP1

43.548

92.537

0.403