Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   SOI69_RS09490 Genome accession   NZ_CP139248
Coordinates   2006328..2007035 (+) Length   235 a.a.
NCBI ID   WP_032004029.1    Uniprot ID   A0A143IXS5
Organism   Acinetobacter pittii strain HCG18     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2001328..2012035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI69_RS09470 (SOI69_09470) - 2004140..2004949 (+) 810 WP_068562883.1 M23 family metallopeptidase -
  SOI69_RS09475 (SOI69_09475) phnO 2004946..2005371 (-) 426 WP_005802684.1 GNAT family N-acetyltransferase -
  SOI69_RS09480 (SOI69_09480) - 2005467..2005889 (-) 423 WP_002121528.1 OsmC family protein -
  SOI69_RS09485 (SOI69_09485) - 2005968..2006087 (-) 120 WP_002121587.1 hypothetical protein -
  SOI69_RS09490 (SOI69_09490) crp 2006328..2007035 (+) 708 WP_032004029.1 cAMP-activated global transcriptional regulator CRP Regulator
  SOI69_RS09495 (SOI69_09495) tas 2007195..2008244 (+) 1050 WP_320540515.1 NADP(H)-dependent aldo-keto reductase -
  SOI69_RS09500 (SOI69_09500) - 2008299..2009078 (-) 780 WP_002121572.1 M48 family metallopeptidase -
  SOI69_RS09505 (SOI69_09505) - 2009194..2009511 (-) 318 WP_002121533.1 hypothetical protein -
  SOI69_RS09510 (SOI69_09510) purA 2009634..2010953 (-) 1320 WP_002121613.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26540.12 Da        Isoelectric Point: 4.6625

>NTDB_id=908235 SOI69_RS09490 WP_032004029.1 2006328..2007035(+) (crp) [Acinetobacter pittii strain HCG18]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEENTVSDEDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=908235 SOI69_RS09490 WP_032004029.1 2006328..2007035(+) (crp) [Acinetobacter pittii strain HCG18]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCGATTATTTTGCGTGAAGATGACGAACGTGAAATTGTTGTTGCCTATTTAAATCCGGGCGATTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCCGAAGTTCGAACTCGTGATGTCTGTGAAATTGCAGA
GATCTCTTATGACAACTTCCACGAACTTAGCAAACAATACCCAGACTTAAGCTATGCTGTTTTTGCACAATTAGTTCGCC
GTCTAAAAAATACGACTCGTAAAATGACAGATCTTGCGTTCATTGATGTGTCTGGTCGTATTGCACGTTGCTTAATCGAT
CTATCTTCTCAACCAGAAGCAATGATTTTGCCGAATGGTCGTCAAATTCGCATTACTCGTCAAGAAATTGGCCGTATTGT
TGGATGTTCGCGTGAGATGGTTGGCCGTGTGCTCAAAACCCTAGAAGATCAAGGTATGATCCAAACTGATGGTAAAGCCA
TTCTTATTTTTGATGCATCATTAGAAGAAAATACTGTTTCTGATGAAGACTACGACGATGAAGAATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A143IXS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

97.872

100

0.979
  crp Vibrio cholerae strain A1552

47.087

87.66

0.413
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404