Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SJN48_RS16860 Genome accession   NZ_CP139212
Coordinates   3549777..3550181 (-) Length   134 a.a.
NCBI ID   WP_002117268.1    Uniprot ID   A0A009NDU9
Organism   Acinetobacter pittii strain WWTP     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3544777..3555181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJN48_RS16830 (SJN48_16870) - 3544861..3545130 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  SJN48_RS16835 (SJN48_16875) rapZ 3545127..3545978 (-) 852 WP_002117179.1 RNase adapter RapZ -
  SJN48_RS16840 (SJN48_16880) panC 3546002..3546850 (-) 849 WP_032057513.1 pantoate--beta-alanine ligase -
  SJN48_RS16845 (SJN48_16885) panB 3546854..3547663 (-) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  SJN48_RS16850 (SJN48_16890) folK 3547709..3548191 (-) 483 WP_002117282.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  SJN48_RS16855 (SJN48_16895) pcnB 3548188..3549651 (-) 1464 WP_002117192.1 polynucleotide adenylyltransferase PcnB -
  SJN48_RS16860 (SJN48_16900) comEA 3549777..3550181 (-) 405 WP_002117268.1 ComEA family DNA-binding protein Machinery gene
  SJN48_RS16865 (SJN48_16905) mazG 3550150..3550956 (-) 807 WP_130120404.1 nucleoside triphosphate pyrophosphohydrolase -
  SJN48_RS16870 (SJN48_16910) - 3551069..3551842 (+) 774 WP_130120405.1 SDR family oxidoreductase -
  SJN48_RS16875 (SJN48_16915) relA 3551889..3554195 (-) 2307 WP_002117181.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15424.68 Da        Isoelectric Point: 10.4871

>NTDB_id=908121 SJN48_RS16860 WP_002117268.1 3549777..3550181(-) (comEA) [Acinetobacter pittii strain WWTP]
MQLSMNLWKNKHNIFIVLFWSLISSTFVQAQSFDQNFKEWKAKQQMYDQKLSMQQASHSNSPKSSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=908121 SJN48_RS16860 WP_002117268.1 3549777..3550181(-) (comEA) [Acinetobacter pittii strain WWTP]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAGCACAACATTTTCATTGTTTTATTTTGGAGCCTGATTTCTTCAACCTT
TGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCTAAACAGCAGATGTATGATCAGAAGTTGAGCATGC
AACAAGCCTCTCATTCTAATAGTCCAAAAAGCTCAGTTATGACTGATTCGTCAGGGCAAATACACTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCGATTGTAGAATACCGTCAAAAGAATGGCGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGTATTGGTCCAGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009NDU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

70.073

100

0.716
  comEA Acinetobacter baumannii D1279779

69.343

100

0.709
  comEA Acinetobacter baylyi ADP1

41.935

92.537

0.388