Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   SJN48_RS01610 Genome accession   NZ_CP139212
Coordinates   343375..343824 (+) Length   149 a.a.
NCBI ID   WP_057068824.1    Uniprot ID   -
Organism   Acinetobacter pittii strain WWTP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 338375..348824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJN48_RS01590 (SJN48_01595) - 339759..340646 (+) 888 WP_057068828.1 metal-dependent hydrolase -
  SJN48_RS01595 (SJN48_01600) - 340776..341366 (+) 591 WP_002117090.1 LemA family protein -
  SJN48_RS01600 (SJN48_01605) - 341391..342473 (+) 1083 WP_130121777.1 YgcG family protein -
  SJN48_RS01605 (SJN48_01610) - 342467..343027 (+) 561 WP_032036624.1 TPM domain-containing protein -
  SJN48_RS01610 (SJN48_01615) pilA 343375..343824 (+) 450 WP_057068824.1 pilin Machinery gene
  SJN48_RS01615 (SJN48_01620) - 343886..345199 (+) 1314 WP_057068823.1 O-antigen ligase -
  SJN48_RS01620 (SJN48_01625) - 345305..346933 (+) 1629 WP_130121775.1 PglL family O-oligosaccharyltransferase -
  SJN48_RS01625 (SJN48_01630) bfr 346977..347441 (-) 465 WP_057068819.1 bacterioferritin -
  SJN48_RS01630 (SJN48_01635) bfd 347684..347878 (-) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  SJN48_RS01635 (SJN48_01640) - 347981..348108 (+) 128 Protein_313 hypothetical protein -
  SJN48_RS01640 (SJN48_01645) - 348098..348481 (-) 384 WP_002116996.1 RidA family protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 15168.16 Da        Isoelectric Point: 7.7737

>NTDB_id=908097 SJN48_RS01610 WP_057068824.1 343375..343824(+) (pilA) [Acinetobacter pittii strain WWTP]
MNAQKGFTLIELMIVVAIIGILAAIAIPQYQNYIARSQASEAFTLADGLKATIATNLQSGTCFADGKASATAGTDDITGK
YGKATIVTSTTAGSKCAISYKFNSSGVSNKLNASGADTIVADVGENGTLTKASGTTVPAEYLPQSFKAS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=908097 SJN48_RS01610 WP_057068824.1 343375..343824(+) (pilA) [Acinetobacter pittii strain WWTP]
ATGAATGCACAAAAAGGTTTTACATTAATTGAACTCATGATCGTAGTTGCCATTATTGGTATTTTGGCTGCAATTGCGAT
TCCTCAGTATCAAAATTATATTGCTCGTTCACAGGCTTCAGAAGCTTTTACTCTTGCAGATGGCTTAAAAGCAACAATTG
CAACAAATTTGCAATCTGGAACTTGTTTCGCAGATGGAAAAGCATCAGCAACAGCTGGTACAGATGATATTACTGGAAAG
TATGGTAAAGCAACAATTGTGACGAGTACGACAGCTGGCAGCAAATGTGCTATCTCTTATAAATTTAATAGTTCAGGGGT
TTCTAATAAACTAAATGCATCAGGTGCAGATACAATCGTAGCTGATGTTGGTGAAAATGGCACTTTAACTAAAGCTTCAG
GTACGACAGTACCGGCTGAATATTTACCTCAGTCTTTCAAAGCATCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter nosocomialis M2

67.114

100

0.671
  comP Acinetobacter baylyi ADP1

38.095

98.658

0.376
  pilE Neisseria gonorrhoeae MS11

39.706

91.275

0.362