Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   SON02_RS09915 Genome accession   NZ_CP139211
Coordinates   2285886..2287682 (+) Length   598 a.a.
NCBI ID   WP_135029235.1    Uniprot ID   A0A4Y9JHZ8
Organism   Streptococcus sp. LysM4     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2280886..2292682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SON02_RS09890 (SON02_09865) - 2281517..2282422 (+) 906 WP_135029243.1 LysR family transcriptional regulator -
  SON02_RS09895 (SON02_09870) lspA 2282424..2282888 (+) 465 WP_135029241.1 signal peptidase II -
  SON02_RS09900 (SON02_09875) - 2282872..2283762 (+) 891 WP_135029239.1 RluA family pseudouridine synthase -
  SON02_RS09905 (SON02_09880) - 2283822..2284157 (+) 336 WP_075104709.1 zinc ribbon domain-containing protein YjdM -
  SON02_RS09910 (SON02_09885) - 2285036..2285671 (+) 636 WP_135029237.1 Pr6Pr family membrane protein -
  SON02_RS09915 (SON02_09890) oppA 2285886..2287682 (+) 1797 WP_135029235.1 oligopeptide ABC transporter substrate-binding protein Regulator
  SON02_RS09920 (SON02_09895) pyrR 2288973..2289503 (+) 531 WP_135029233.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  SON02_RS09925 (SON02_09900) - 2289519..2290448 (+) 930 WP_135029231.1 aspartate carbamoyltransferase catalytic subunit -
  SON02_RS09930 (SON02_09905) - 2290491..2291579 (+) 1089 WP_135029229.1 carbamoyl phosphate synthase small subunit -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 65940.22 Da        Isoelectric Point: 4.6667

>NTDB_id=908087 SON02_RS09915 WP_135029235.1 2285886..2287682(+) (oppA) [Streptococcus sp. LysM4]
MKKTSKAFSLAAITLLSTSILAACGANSSKSSSSAETMNLSFLGEVTHDGSAIKGGQFKYALVAASASTGLLIDELVDNS
VGSTFGVLVDEGMFGYDGDRKLDDSGLAKVDFDLKAKKVTVKLTGKDYKWSDGEPFTIDDYIFTIEKMADQGYTGVRFDD
GFKNIIGMDDFVAGKADSISGIDKVDDYTVVLNVKEMSPSMMYAGGDIPSYVVPKHIFKDIPVADWEKSEYARATSKIVG
MGAFKIKEVVSGESVTFVPNEHYYKGKVKIDSLKMDIVSPDTIVSEMKAGHYDYAEMPTDQLDSFKDMSNITVLGTLASS
YEYLSFNLGKYDKDAGKNVMNPDAKMNDVNLRQAMGYALDTKTAGEKLYNGLYHPANSLIISFFGDLHDTDLKGYTYDPD
KSKALLDKAGYKDVDGDGIREDKDGKPLKITLAARKRTEANEALIQQYIAWWKEVGLNVELYTGRTMELNSFYDTIGAND
ANIDAYLAGWSTGYDPNPTGLWGPEAKFNYSRYVSDENTKLLKALGSEESFDEKKNLENYKKWQENAEKEAFAIPLFESE
KLIAVNKRVKYFDTKYGSASKSPWIEVELTADTGVAEK

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=908087 SON02_RS09915 WP_135029235.1 2285886..2287682(+) (oppA) [Streptococcus sp. LysM4]
ATGAAAAAGACAAGTAAAGCATTTTCACTAGCCGCAATCACGCTCCTGTCGACATCCATCTTGGCTGCATGTGGAGCAAA
TAGTTCTAAGAGCTCATCATCAGCTGAAACAATGAATTTGAGCTTTCTAGGAGAAGTGACACACGACGGTTCTGCGATTA
AGGGTGGACAGTTTAAGTATGCACTTGTGGCAGCTTCAGCATCAACAGGATTATTGATTGATGAATTGGTAGATAATAGT
GTGGGTTCAACGTTTGGAGTATTGGTTGATGAGGGAATGTTTGGTTATGATGGTGACCGCAAACTCGATGATTCAGGTCT
TGCTAAAGTCGACTTTGATTTAAAAGCTAAAAAAGTTACCGTTAAGCTCACAGGTAAGGATTATAAGTGGTCAGATGGGG
AGCCATTTACCATTGATGATTATATCTTCACTATTGAAAAAATGGCTGACCAAGGCTATACAGGAGTACGTTTCGATGAT
GGTTTTAAAAATATCATTGGAATGGATGACTTTGTAGCAGGAAAAGCAGACAGCATTTCAGGGATTGACAAGGTAGATGA
TTATACAGTTGTCCTAAATGTTAAAGAAATGTCTCCTTCTATGATGTATGCAGGCGGAGATATTCCGTCTTATGTAGTAC
CAAAACATATCTTTAAGGATATTCCAGTAGCAGACTGGGAAAAAAGCGAGTATGCACGTGCGACCTCTAAAATCGTCGGC
ATGGGAGCGTTTAAGATTAAAGAAGTGGTCAGTGGCGAGTCTGTAACCTTTGTTCCAAATGAACACTATTATAAAGGAAA
AGTGAAGATAGACAGTCTGAAGATGGATATTGTTTCTCCCGATACCATTGTGTCAGAAATGAAAGCTGGCCACTATGACT
ATGCAGAAATGCCAACAGATCAGTTAGATAGTTTTAAAGATATGTCTAATATTACTGTACTTGGTACGTTAGCTTCTAGC
TATGAATACCTATCATTCAACCTTGGAAAATATGACAAGGACGCAGGGAAGAATGTCATGAATCCGGATGCTAAAATGAA
TGATGTCAATTTGCGTCAGGCTATGGGGTACGCTCTTGATACGAAGACGGCTGGCGAAAAACTTTACAATGGCTTGTACC
ACCCAGCCAACTCTCTTATTATCTCATTCTTTGGTGATTTACATGATACTGATTTGAAAGGCTATACCTACGATCCAGAC
AAATCAAAAGCCTTACTTGATAAAGCAGGATATAAGGATGTGGACGGAGATGGTATCCGTGAAGATAAGGATGGGAAACC
ACTCAAAATTACCCTTGCAGCTCGTAAACGGACAGAAGCCAACGAAGCTCTTATCCAACAGTATATTGCTTGGTGGAAAG
AAGTTGGCTTGAATGTCGAACTCTACACAGGTCGTACCATGGAGTTGAATTCTTTCTATGACACAATTGGAGCTAATGAT
GCAAATATCGATGCTTACCTAGCAGGTTGGTCCACTGGCTATGATCCAAACCCAACAGGACTATGGGGACCAGAAGCGAA
ATTTAACTACTCACGTTATGTATCAGATGAAAATACCAAGTTGCTCAAAGCGCTTGGCTCAGAAGAGTCCTTTGATGAGA
AGAAAAATCTTGAAAACTACAAAAAATGGCAAGAAAATGCTGAGAAAGAAGCATTTGCGATTCCATTGTTTGAATCTGAA
AAGCTTATCGCTGTCAATAAACGTGTCAAATATTTTGATACCAAATACGGTTCAGCTTCTAAATCACCATGGATTGAGGT
TGAGTTGACCGCAGATACAGGAGTAGCTGAGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(126-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y9JHZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

70.736

100

0.707