Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   SON02_RS08985 Genome accession   NZ_CP139211
Coordinates   2055948..2056949 (+) Length   333 a.a.
NCBI ID   WP_167752606.1    Uniprot ID   -
Organism   Streptococcus sp. LysM4     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2050948..2061949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SON02_RS08970 (SON02_08950) tgt 2051047..2052186 (+) 1140 WP_135027281.1 tRNA guanosine(34) transglycosylase Tgt -
  SON02_RS08975 (SON02_08955) - 2052483..2053250 (-) 768 WP_135027279.1 MerR family transcriptional regulator -
  SON02_RS08980 (SON02_08960) - 2054570..2055652 (-) 1083 WP_135027277.1 M24 family metallopeptidase -
  SON02_RS08985 (SON02_08965) ccpA 2055948..2056949 (+) 1002 WP_167752606.1 catabolite control protein A Regulator
  SON02_RS08990 (SON02_08970) - 2058255..2059253 (+) 999 WP_135027271.1 glycosyltransferase family 4 protein -
  SON02_RS08995 (SON02_08975) - 2059254..2060570 (+) 1317 WP_135027269.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36705.78 Da        Isoelectric Point: 5.3175

>NTDB_id=908080 SON02_RS08985 WP_167752606.1 2055948..2056949(+) (ccpA) [Streptococcus sp. LysM4]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYFA
TLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLPS
VNIDYAKASKDVVDLLAKNNEKIAFVSGPLVDDINGKVRFSGYREGLKANGLSFNEGLVFESKYKYEEGYALAERILNAG
ATAAYVAEDEIAAGLLNGIVDKGIKVPEDFEIITSDDSLVTKFTNPNLTSVSQPLYDIGAIAMRMLTKIMHKEELDTREV
ILNHGIKERKSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=908080 SON02_RS08985 WP_167752606.1 2055948..2056949(+) (ccpA) [Streptococcus sp. LysM4]
TTGAATACTGATGATACAGTAACCATTTATGATGTCGCTCGCGAAGCTGGTGTTTCGATGGCAACAGTCAGCCGAGTGGT
AAATGGGAATAAGAATGTAAAAGAAAACACGCGAAAAAAAGTATTGGAAGTGATTGATCGTTTGGACTACCGACCAAATG
CGGTAGCGCGTGGTTTAGCTAGTAAGAAAACAACGACAGTGGGAGTTGTCATTCCAAATATTGCCAATGCTTATTTTGCG
ACCTTGGCCAAAGGGATCGATGATATTGCGGACATGTATAAGTATAATATTGTCCTTGCTAACAGTGATGAAAATGATGA
AAAAGAAATCAACGTGGTGAATACCTTGTTTTCCAAACAGGTTGACGGTATTATTTTCATGGGCTATCATTTGACTGATA
AAATTCGTGCAGAGTTTTCTCGTTCCCGAACACCAATCGTGCTTGCAGGAACAGTTGATTTGGAGCATCAGTTGCCAAGC
GTCAACATTGATTATGCAAAAGCAAGCAAGGATGTAGTGGATTTGTTGGCTAAAAACAATGAAAAGATAGCCTTTGTATC
AGGTCCATTAGTGGATGACATCAATGGTAAAGTTCGTTTCTCAGGCTACAGAGAAGGATTGAAAGCAAATGGATTGTCCT
TTAACGAGGGACTTGTCTTTGAATCAAAATACAAGTACGAAGAAGGCTATGCGCTTGCGGAGCGTATCTTGAATGCTGGA
GCAACAGCGGCCTATGTGGCAGAAGATGAAATAGCTGCGGGATTGTTGAACGGAATTGTTGATAAAGGAATCAAGGTTCC
AGAAGATTTTGAAATTATTACGAGTGACGACTCTTTAGTCACGAAATTTACGAATCCAAACTTGACTTCTGTCAGTCAGC
CTTTGTATGATATCGGAGCGATTGCTATGCGGATGTTGACTAAGATTATGCACAAGGAAGAGTTGGATACACGTGAAGTT
ATCTTGAACCACGGTATTAAAGAACGCAAGTCAACCAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(8-53)

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

79.58

100

0.796
  ccpA Streptococcus gordonii str. Challis substr. CH1

78.979

100

0.79
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.006

99.399

0.577