Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   SON02_RS01360 Genome accession   NZ_CP139211
Coordinates   303516..304898 (-) Length   460 a.a.
NCBI ID   WP_135026743.1    Uniprot ID   A0A4Y9JLW8
Organism   Streptococcus sp. LysM4     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 298516..309898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SON02_RS01345 (SON02_01340) - 299323..301089 (-) 1767 WP_135026746.1 flavocytochrome c -
  SON02_RS01350 - 301683..301970 (+) 288 WP_167752583.1 transposase -
  SON02_RS01355 (SON02_01345) - 302176..303396 (-) 1221 WP_135026744.1 transglutaminase domain-containing protein -
  SON02_RS01360 (SON02_01350) ciaH 303516..304898 (-) 1383 WP_135026743.1 sensor histidine kinase Regulator
  SON02_RS01365 (SON02_01355) ciaR 304888..305562 (-) 675 WP_135026742.1 response regulator transcription factor Regulator
  SON02_RS01370 (SON02_01360) phoU 306289..306945 (-) 657 WP_135026741.1 phosphate signaling complex protein PhoU -
  SON02_RS01375 (SON02_01365) pstB 306964..307722 (-) 759 WP_135026740.1 phosphate ABC transporter ATP-binding protein PstB -
  SON02_RS01380 (SON02_01370) pstB 307735..308538 (-) 804 WP_135026739.1 phosphate ABC transporter ATP-binding protein PstB -
  SON02_RS01385 (SON02_01375) pstA 308549..309442 (-) 894 WP_135026738.1 phosphate ABC transporter permease PstA -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 52819.72 Da        Isoelectric Point: 6.4102

>NTDB_id=908041 SON02_RS01360 WP_135026743.1 303516..304898(-) (ciaH) [Streptococcus sp. LysM4]
MLIKFRNLYHTDNFSYFIRYFAVFTLIFSLMTLIIFQLMRSTMYRSSDENFKEFANNPEMMMEFARARGLSPEAEIVWEK
NTSADQANKKMEVSGTADGENKLFYPTSKIRLNANYHVVLYDSKGNRLNQVDYFSGLADLQLDKESLDVITECVVTTPFD
EKEYYRCMTLTLPSNAVSAYTGLDIKYATILFNTSQIKSSIASYESTVMFVMIGFWFISIIASIYLSNVSMRPILASFQK
QKEFVENASHELRTPLTVLQNRLESLFRHPEATIMDSSENIDSSLAEVRNMRLLTTNLLNLARRDDGLKPEIVDVQPTFF
DETLANYRIIAEENGKILEVNNQVKEVLHTDKTLLKQLITILVDNAMKYSEDDGHIWIDILVKDRFLIIKVADNGLGISL
ENKKKIFDRFYRVDKARTRQKGGFGLGLSLAKQIIETLNGSIIVQDNHPKGSLFEVRLPK

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=908041 SON02_RS01360 WP_135026743.1 303516..304898(-) (ciaH) [Streptococcus sp. LysM4]
ATGTTGATTAAATTTCGTAACCTCTACCATACAGATAATTTTTCTTATTTTATCCGGTATTTTGCTGTTTTTACCCTCAT
TTTCAGCTTAATGACGCTCATTATTTTCCAGCTGATGCGCTCAACGATGTATCGGAGTTCAGACGAAAATTTTAAAGAAT
TTGCAAATAACCCAGAGATGATGATGGAGTTTGCACGGGCACGTGGCTTATCACCTGAAGCAGAAATCGTCTGGGAAAAA
AATACGAGTGCAGATCAGGCGAATAAAAAGATGGAGGTCAGTGGGACAGCTGATGGTGAAAATAAACTCTTTTATCCCAC
TTCCAAAATCAGACTGAATGCCAATTACCATGTTGTACTCTACGATAGTAAGGGCAATCGCCTTAATCAAGTGGATTATT
TCTCGGGCTTAGCTGATCTACAGCTTGATAAGGAGTCTTTAGATGTCATTACTGAGTGTGTCGTGACTACTCCCTTTGAT
GAGAAAGAATACTATCGTTGTATGACTCTTACCCTGCCGTCCAATGCTGTTTCAGCTTATACAGGCTTAGATATCAAATA
CGCAACCATTCTCTTTAATACTAGTCAGATTAAGTCTTCCATTGCTTCTTACGAATCAACGGTGATGTTTGTTATGATTG
GTTTTTGGTTCATTTCGATTATAGCTAGTATCTATCTTTCAAATGTCAGTATGCGCCCAATTCTCGCCAGCTTTCAAAAG
CAGAAAGAATTCGTGGAAAATGCCAGTCATGAATTGCGCACTCCCCTCACTGTCTTGCAAAACCGTCTGGAAAGTCTGTT
CAGACATCCTGAGGCGACGATTATGGATAGTAGTGAGAATATTGACTCAAGTTTAGCAGAAGTGCGCAATATGCGACTGT
TAACGACTAATTTATTAAACCTGGCTCGGCGTGATGATGGGTTAAAACCCGAAATTGTAGATGTTCAGCCCACTTTCTTT
GATGAAACGTTAGCCAATTATCGCATCATAGCTGAGGAAAATGGTAAAATTTTGGAAGTCAACAACCAAGTCAAGGAAGT
GCTTCACACAGATAAGACCTTACTGAAGCAGTTGATAACCATTTTGGTGGATAATGCTATGAAATATTCTGAAGATGACG
GACATATCTGGATTGATATTTTGGTCAAAGACCGTTTTCTCATCATTAAAGTGGCAGATAATGGACTTGGGATTAGTCTT
GAAAATAAAAAGAAAATTTTTGATCGTTTCTATCGTGTCGATAAGGCAAGAACCCGTCAAAAGGGAGGTTTTGGACTTGG
TCTTTCTCTTGCCAAACAGATCATTGAAACCTTAAATGGCTCGATTATCGTTCAAGACAATCATCCAAAGGGAAGCCTTT
TTGAAGTACGTTTACCCAAGTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(351-459)

His Kinase A (phospho-acceptor) domain (HisKA)

(241-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y9JLW8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

51.528

99.565

0.513
  ciaH Streptococcus pneumoniae Rx1

50

99.565

0.498
  ciaH Streptococcus pneumoniae D39

50

99.565

0.498
  ciaH Streptococcus pneumoniae R6

50

99.565

0.498
  ciaH Streptococcus pneumoniae TIGR4

50

99.565

0.498