Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ABQ280_RS05910 Genome accession   NZ_CP158284
Coordinates   1212640..1213512 (+) Length   290 a.a.
NCBI ID   WP_042727648.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ATCC 6538     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1207640..1218512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ280_RS05890 (ABQ280_05890) ylqF 1208476..1209360 (+) 885 WP_000236722.1 ribosome biogenesis GTPase YlqF -
  ABQ280_RS05895 (ABQ280_05895) - 1209344..1210111 (+) 768 WP_000176409.1 ribonuclease HII -
  ABQ280_RS05900 (ABQ280_05900) sucC 1210220..1211386 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  ABQ280_RS05905 (ABQ280_05905) sucD 1211408..1212316 (+) 909 WP_042727649.1 succinate--CoA ligase subunit alpha -
  ABQ280_RS05910 (ABQ280_05910) dprA 1212640..1213512 (+) 873 WP_042727648.1 DNA-processing protein DprA Machinery gene
  ABQ280_RS05915 (ABQ280_05915) topA 1213686..1215761 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  ABQ280_RS05920 (ABQ280_05920) trmFO 1215917..1217224 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33212.51 Da        Isoelectric Point: 8.3112

>NTDB_id=908023 ABQ280_RS05910 WP_042727648.1 1212640..1213512(+) (dprA) [Staphylococcus aureus strain ATCC 6538]
MLNHILLKLIWSRFTTAQIHLLLKTFPSCCEVDEYERMHILENFCKLLADKKIDAKVNRYKEISVDEIETTIQKTQLNYI
TCFDHNYPYLLKETYNYPIILFYKGNINLLSYPHTLAVVGLRLSGDYTLKALNHLFVSFQQMSFCVVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTSALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=908023 ABQ280_RS05910 WP_042727648.1 1212640..1213512(+) (dprA) [Staphylococcus aureus strain ATCC 6538]
ATGTTAAATCACATTTTACTTAAATTAATTTGGAGTCGTTTTACTACTGCACAAATACATCTACTTTTAAAAACTTTTCC
GAGTTGTTGTGAAGTAGATGAATATGAACGAATGCATATTCTAGAAAATTTTTGTAAGCTTTTAGCGGATAAAAAAATAG
ATGCTAAAGTTAACCGTTACAAGGAAATTTCTGTTGATGAAATTGAAACAACAATTCAGAAAACCCAATTAAATTATATA
ACTTGTTTTGATCATAATTATCCCTATTTATTAAAAGAAACTTACAATTATCCTATCATTTTGTTCTATAAAGGGAATAT
TAACCTCCTTAGTTATCCGCACACTTTAGCTGTCGTTGGGTTACGATTATCAGGCGACTATACTTTAAAGGCATTGAATC
ATCTCTTCGTTTCATTTCAACAAATGAGTTTTTGTGTCGTTTCCGGGCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATCAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

65.347

100

0.683
  dprA Staphylococcus aureus N315

66.552

100

0.666
  dprA Lactococcus lactis subsp. cremoris KW2

37.857

96.552

0.366