Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ABQ280_RS03715 Genome accession   NZ_CP158284
Coordinates   775234..776316 (+) Length   360 a.a.
NCBI ID   WP_042727548.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ATCC 6538     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 770234..781316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ280_RS03695 (ABQ280_03695) - 770604..771674 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  ABQ280_RS03700 (ABQ280_03700) - 771992..773047 (+) 1056 WP_000258151.1 MraY family glycosyltransferase -
  ABQ280_RS03705 (ABQ280_03705) - 773219..773860 (-) 642 WP_000192957.1 YigZ family protein -
  ABQ280_RS03710 (ABQ280_03710) fakB1 774004..774870 (+) 867 WP_000686344.1 fatty acid kinase binding subunit FakB1 -
  ABQ280_RS03715 (ABQ280_03715) comFA 775234..776316 (+) 1083 WP_042727548.1 DEAD/DEAH box helicase Machinery gene
  ABQ280_RS03720 (ABQ280_03720) - 776309..776983 (+) 675 WP_042727547.1 ComF family protein -
  ABQ280_RS03725 (ABQ280_03725) raiA 777044..777616 (+) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  ABQ280_RS03730 (ABQ280_03730) secA 778030..780561 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  ABQ280_RS03735 (ABQ280_03735) - 780603..780707 (+) 105 WP_001790092.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42111.65 Da        Isoelectric Point: 9.8307

>NTDB_id=908004 ABQ280_RS03715 WP_042727548.1 775234..776316(+) (comFA) [Staphylococcus aureus strain ATCC 6538]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNKKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTIIERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=908004 ABQ280_RS03715 WP_042727548.1 775234..776316(+) (comFA) [Staphylococcus aureus strain ATCC 6538]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAGGGAGATAATATAGCTATTGTGTCA
CCGCGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATCTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAAGAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATAATAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTCCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.643

94.167

0.364