Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   SLP98_RS08290 Genome accession   NZ_CP139204
Coordinates   1755727..1756107 (+) Length   126 a.a.
NCBI ID   WP_000836909.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain HNZZ130D     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1750727..1761107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLP98_RS08260 (SLP98_08260) kdsB 1751630..1752391 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  SLP98_RS08265 (SLP98_08265) - 1752403..1753383 (+) 981 WP_001075419.1 DNA polymerase III subunit delta' -
  SLP98_RS08270 (SLP98_08270) - 1753395..1753736 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  SLP98_RS08275 (SLP98_08275) - 1753754..1754527 (+) 774 WP_000497301.1 TatD family hydrolase -
  SLP98_RS08280 (SLP98_08280) - 1754565..1755173 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  SLP98_RS08285 (SLP98_08285) - 1755183..1755737 (+) 555 WP_000841372.1 type II secretion system protein -
  SLP98_RS08290 (SLP98_08290) xcpV 1755727..1756107 (+) 381 WP_000836909.1 type II secretion system minor pseudopilin GspI Machinery gene
  SLP98_RS08295 (SLP98_08295) xcpW 1756107..1756808 (+) 702 WP_000594588.1 type II secretion system minor pseudopilin GspJ Machinery gene
  SLP98_RS08300 (SLP98_08300) gspK 1756808..1757767 (+) 960 WP_001218621.1 type II secretion system minor pseudopilin GspK -
  SLP98_RS08305 (SLP98_08305) - 1757997..1758593 (+) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  SLP98_RS08310 (SLP98_08310) ung 1758644..1759357 (+) 714 WP_001177527.1 uracil-DNA glycosylase -
  SLP98_RS08315 (SLP98_08315) - 1759354..1760478 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  SLP98_RS08320 (SLP98_08320) tadA 1760485..1760988 (+) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13991.24 Da        Isoelectric Point: 9.8004

>NTDB_id=907916 SLP98_RS08290 WP_000836909.1 1755727..1756107(+) (xcpV) [Acinetobacter baumannii strain HNZZ130D]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDLDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=907916 SLP98_RS08290 WP_000836909.1 1755727..1756107(+) (xcpV) [Acinetobacter baumannii strain HNZZ130D]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGGACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCTGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992