Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   SK095_RS00935 Genome accession   NZ_CP139195
Coordinates   213762..215981 (+) Length   739 a.a.
NCBI ID   WP_136488862.1    Uniprot ID   A0A8H8XRA1
Organism   Pseudomonas sp. AN-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 208762..220981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK095_RS00915 (SK095_00915) - 210172..210894 (-) 723 WP_136488866.1 glycerophosphodiester phosphodiesterase -
  SK095_RS00920 (SK095_00920) - 211109..212356 (+) 1248 WP_320547579.1 lipoprotein-releasing ABC transporter permease subunit -
  SK095_RS00925 (SK095_00925) lolD 212349..213038 (+) 690 WP_136488864.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  SK095_RS00930 (SK095_00930) - 213083..213613 (-) 531 WP_136488863.1 DUF2062 domain-containing protein -
  SK095_RS00935 (SK095_00935) comA 213762..215981 (+) 2220 WP_136488862.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SK095_RS00940 (SK095_00940) exbB 216052..216687 (+) 636 WP_136488861.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  SK095_RS00945 (SK095_00945) - 216684..217115 (+) 432 WP_320547580.1 biopolymer transporter ExbD -
  SK095_RS00950 (SK095_00950) lpxK 217115..218113 (+) 999 WP_320547581.1 tetraacyldisaccharide 4'-kinase -
  SK095_RS00955 (SK095_00955) - 218155..218340 (+) 186 WP_136488858.1 Trm112 family protein -
  SK095_RS00960 (SK095_00960) kdsB 218337..219101 (+) 765 WP_320547582.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  SK095_RS00965 (SK095_00965) - 219103..219567 (+) 465 WP_320547583.1 low molecular weight protein-tyrosine-phosphatase -
  SK095_RS00970 (SK095_00970) murB 219564..220583 (+) 1020 WP_320547584.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 78263.71 Da        Isoelectric Point: 10.2269

>NTDB_id=907795 SK095_RS00935 WP_136488862.1 213762..215981(+) (comA) [Pseudomonas sp. AN-1]
MRTGLIALCGGLLCLRFLPALPPAAALVALAVVGVALLPTRGYPLALFLLGLGWACGSAQLALDDRLAAELDGRTLWLQG
RIVGLPEREVGVTRFHIEQARSRRASLPQRLRLSWYGAPPLAAGEVWRLAVQLKRPRGLVNPQGFDYEAWLTARRVGATG
SVKAGERLSAADGPQGWRDRLRSALLAAPAHGREGALAALVLGDGSGLGEGDWQVLQATGTTHLLVISGQHVALLAGLLY
ALVLGLFRRGWWPRGWPWLPCACGLAMAGALAYGLLAGFEVPVQRACVMLAVVLLWRWRFRSLGVWLPLLAALTLVLVVE
PLASLQPGFWLSFGAVALLAWCFSGRLAPAAGWRVLPRAQWAMTLGLLPLLLALGLPVSLTGALANLLAVPWVGVGVVPL
ALLGTLLLPLPGVGSSLLWLAGLQLDLLFDLLAWLAELAPARQFAAAPGWAVLLGLGGVLLALLPAGLPLRLFGALMPLP
LLFPAAAGIPSGEAEVRVLDVGQGLAVLVRTSAHALLYDAGPAARGFDSGEKVVLPLLLRQGVGRLDTLLLSHADQDHAG
GAGSVLAGLPASRLLAGEAARQRLPYAVEPCRDGEQWQWDAVRFTTWQMSGDGNDASCLLLVEARGERLLLTGDISASGE
RALLGSGRDLRADWLLAPHHGSRSSSSAEFIAAVAPRGVLFSRGWNNAFGHPHPQVVARFRAAGVRIHDSAAEGALQLWL
GRHGTVAGERAQARFWREK

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=907795 SK095_RS00935 WP_136488862.1 213762..215981(+) (comA) [Pseudomonas sp. AN-1]
ATGCGCACGGGACTGATCGCGCTCTGTGGCGGGCTGCTGTGCCTGCGTTTCCTGCCGGCCTTGCCGCCGGCGGCGGCTCT
CGTCGCGCTGGCGGTCGTGGGGGTGGCGCTGCTGCCGACCCGCGGCTATCCACTGGCGCTGTTCCTGCTCGGCCTGGGCT
GGGCCTGCGGCTCGGCGCAGCTGGCGCTGGACGACCGCCTGGCCGCCGAACTGGATGGCCGGACCCTGTGGCTGCAGGGG
CGGATCGTCGGTCTGCCGGAGCGGGAGGTGGGCGTTACCCGCTTCCATATCGAGCAGGCCCGCTCGCGCCGCGCAAGCCT
CCCCCAGCGCCTGCGCCTGTCCTGGTACGGAGCGCCACCGCTGGCGGCCGGCGAGGTCTGGCGCCTGGCGGTGCAACTCA
AGCGCCCGCGCGGTCTGGTCAATCCCCAGGGTTTCGACTACGAGGCCTGGCTGACGGCACGTCGCGTCGGCGCCACCGGC
TCGGTCAAGGCCGGCGAGCGGCTGAGCGCCGCGGACGGGCCGCAAGGCTGGCGCGATCGCCTGCGCAGTGCGCTGCTGGC
GGCGCCGGCACATGGTCGGGAGGGGGCCCTGGCGGCACTGGTGCTGGGCGACGGTTCGGGGCTCGGCGAAGGGGACTGGC
AGGTGCTGCAGGCCACCGGCACCACCCATCTGCTGGTGATCTCCGGTCAGCACGTGGCACTGCTGGCCGGTCTGCTGTAT
GCGCTGGTGCTCGGCCTGTTCCGCCGCGGCTGGTGGCCGCGGGGCTGGCCCTGGCTGCCCTGCGCCTGTGGCCTGGCGAT
GGCCGGTGCGCTCGCCTACGGCCTGCTGGCCGGCTTCGAGGTGCCGGTGCAGCGGGCCTGCGTCATGCTGGCGGTGGTGC
TGTTGTGGCGCTGGCGCTTCCGCAGCCTGGGCGTCTGGCTGCCGCTGCTGGCGGCGTTGACCCTGGTGCTGGTGGTCGAG
CCGCTGGCCAGCCTGCAACCGGGTTTCTGGCTGTCGTTCGGCGCGGTGGCGCTGCTGGCCTGGTGCTTCAGCGGCCGCCT
GGCGCCGGCCGCCGGTTGGCGGGTGCTGCCGCGCGCGCAGTGGGCGATGACTCTCGGCCTGTTGCCGCTGCTGCTGGCGC
TCGGCCTGCCGGTCAGTCTCACCGGCGCGCTGGCCAACCTGCTGGCGGTGCCCTGGGTCGGTGTCGGCGTGGTGCCGCTG
GCCCTGCTCGGGACCCTGCTGCTGCCGCTACCCGGGGTGGGCAGCAGCCTGCTGTGGCTGGCCGGGCTGCAGCTCGACCT
GCTGTTCGACCTGCTCGCCTGGCTCGCCGAGCTGGCGCCGGCCCGGCAGTTCGCCGCTGCGCCTGGCTGGGCGGTGCTGC
TCGGGCTGGGCGGCGTCCTGCTGGCGCTGCTGCCGGCCGGGTTGCCGCTGCGCCTGTTCGGCGCCCTGATGCCGCTGCCG
TTGCTGTTTCCCGCCGCGGCCGGCATTCCGAGCGGCGAGGCCGAGGTGCGCGTGCTGGATGTCGGGCAGGGGCTGGCGGT
GCTGGTACGCACCAGCGCTCACGCTCTGCTGTACGACGCCGGCCCGGCCGCGCGCGGGTTCGATTCGGGAGAGAAGGTGG
TGCTGCCGCTCCTGCTCAGGCAGGGCGTCGGCAGGCTCGACACGCTGCTGCTAAGCCATGCCGACCAGGATCATGCCGGC
GGGGCAGGCAGCGTGCTGGCCGGTCTTCCGGCGTCCCGCCTGCTCGCCGGCGAGGCGGCGCGACAGCGTCTGCCATACGC
CGTCGAGCCCTGTCGCGATGGCGAGCAGTGGCAATGGGACGCCGTGCGTTTCACCACCTGGCAGATGAGCGGCGACGGCA
ATGATGCGTCCTGCCTGCTGCTGGTAGAGGCGCGCGGCGAGCGGCTGCTGCTCACCGGAGACATCTCCGCGAGCGGCGAG
CGCGCGTTGCTGGGCAGTGGCCGCGATCTGCGCGCCGACTGGCTGCTGGCGCCCCACCACGGCAGTCGCAGTTCGTCGTC
GGCGGAGTTCATCGCCGCGGTGGCGCCGCGCGGCGTGCTGTTCTCGCGGGGCTGGAACAATGCCTTCGGCCACCCGCATC
CGCAGGTGGTGGCGCGTTTTCGGGCCGCCGGCGTGCGCATCCACGACAGCGCCGCCGAGGGGGCGCTGCAGTTGTGGCTC
GGCCGCCATGGGACGGTCGCCGGCGAGCGCGCGCAGGCGCGTTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Competence protein (Competence)

(200-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(500-676)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.942

97.7

0.595
  comA Ralstonia pseudosolanacearum GMI1000

37.863

100

0.388