Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   SK095_RS00940 Genome accession   NZ_CP139195
Coordinates   216052..216687 (+) Length   211 a.a.
NCBI ID   WP_136488861.1    Uniprot ID   -
Organism   Pseudomonas sp. AN-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 211052..221687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK095_RS00920 (SK095_00920) - 211109..212356 (+) 1248 WP_320547579.1 lipoprotein-releasing ABC transporter permease subunit -
  SK095_RS00925 (SK095_00925) lolD 212349..213038 (+) 690 WP_136488864.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  SK095_RS00930 (SK095_00930) - 213083..213613 (-) 531 WP_136488863.1 DUF2062 domain-containing protein -
  SK095_RS00935 (SK095_00935) comA 213762..215981 (+) 2220 WP_136488862.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SK095_RS00940 (SK095_00940) exbB 216052..216687 (+) 636 WP_136488861.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  SK095_RS00945 (SK095_00945) - 216684..217115 (+) 432 WP_320547580.1 biopolymer transporter ExbD -
  SK095_RS00950 (SK095_00950) lpxK 217115..218113 (+) 999 WP_320547581.1 tetraacyldisaccharide 4'-kinase -
  SK095_RS00955 (SK095_00955) - 218155..218340 (+) 186 WP_136488858.1 Trm112 family protein -
  SK095_RS00960 (SK095_00960) kdsB 218337..219101 (+) 765 WP_320547582.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  SK095_RS00965 (SK095_00965) - 219103..219567 (+) 465 WP_320547583.1 low molecular weight protein-tyrosine-phosphatase -
  SK095_RS00970 (SK095_00970) murB 219564..220583 (+) 1020 WP_320547584.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22863.93 Da        Isoelectric Point: 7.2471

>NTDB_id=907796 SK095_RS00940 WP_136488861.1 216052..216687(+) (exbB) [Pseudomonas sp. AN-1]
MWELVKAGGWMMLPIILCSIAAIGISAERLWTLRPARITPPNLLGQVWRWIQDKQLDSQKLKELRASSPLGEVLAAGLAN
SKHGRDIMKECIEEAAARVIHDLERYLNALGTIAAIAPLLGLLGTVLGMIEIFSGFMGSGMANAPVLAGGISKALITTAA
GLFVGIPALFFHRYLQRRVDELVVGMEQEAIRLVEVVQGDRDVDLGEGGKR

Nucleotide


Download         Length: 636 bp        

>NTDB_id=907796 SK095_RS00940 WP_136488861.1 216052..216687(+) (exbB) [Pseudomonas sp. AN-1]
GTGTGGGAATTGGTCAAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTCTGTTCGATCGCGGCCATCGGCATCAGTGC
CGAACGCCTGTGGACCCTGCGTCCGGCGCGGATCACCCCGCCGAACCTGCTGGGCCAGGTATGGCGCTGGATCCAGGACA
AGCAGCTGGACAGCCAGAAACTCAAGGAGCTGCGCGCCTCCTCGCCGCTGGGGGAGGTGCTGGCCGCCGGTCTCGCCAAC
TCCAAGCATGGTCGCGACATCATGAAGGAGTGCATCGAGGAAGCCGCTGCGCGGGTCATCCATGACCTGGAGCGCTACCT
CAACGCGCTCGGCACCATCGCCGCCATCGCCCCGCTGCTCGGCCTGCTCGGCACCGTGCTGGGCATGATCGAGATCTTCA
GCGGCTTCATGGGCAGCGGCATGGCCAACGCGCCGGTGCTCGCCGGCGGCATCTCCAAGGCGCTGATCACCACCGCCGCC
GGTCTGTTCGTCGGCATCCCCGCGCTGTTCTTCCACCGCTACCTGCAGCGTCGCGTCGACGAGCTGGTGGTCGGCATGGA
GCAGGAAGCCATCCGCCTGGTGGAAGTGGTCCAGGGCGACCGTGACGTCGATCTGGGCGAGGGCGGCAAGCGGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

88.942

98.578

0.877