Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   SK061_RS08925 Genome accession   NZ_CP139190
Coordinates   1727977..1728264 (+) Length   95 a.a.
NCBI ID   WP_006638346.1    Uniprot ID   M5P373
Organism   Bacillus sonorensis strain PMC204     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1722977..1733264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK061_RS08905 (SK061_08905) - 1724617..1724991 (+) 375 WP_006638350.1 nuclear transport factor 2 family protein -
  SK061_RS08910 (SK061_08910) - 1725144..1726376 (-) 1233 WP_006638349.1 aminopeptidase -
  SK061_RS08915 (SK061_08915) - 1726463..1726594 (-) 132 WP_006638348.1 protein YkpC -
  SK061_RS08920 (SK061_08920) mreBH 1726668..1727675 (-) 1008 WP_006638347.1 rod-share determining protein MreBH -
  SK061_RS08925 (SK061_08925) abrB 1727977..1728264 (+) 288 WP_006638346.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  SK061_RS08930 (SK061_08930) - 1728469..1729800 (+) 1332 WP_006638345.1 ATP-binding protein -
  SK061_RS08935 (SK061_08935) - 1729873..1730535 (+) 663 WP_006638344.1 TrkA family potassium uptake protein -
  SK061_RS08940 (SK061_08940) ade 1730684..1732396 (+) 1713 WP_373870198.1 adenine deaminase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10696.53 Da        Isoelectric Point: 7.1666

>NTDB_id=907724 SK061_RS08925 WP_006638346.1 1727977..1728264(+) (abrB) [Bacillus sonorensis strain PMC204]
MKSIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDKDKIVLQKYKPHGVCLITGEITSENREYANGKITLSPEGAE
MLLEELKTALHQAKS

Nucleotide


Download         Length: 288 bp        

>NTDB_id=907724 SK061_RS08925 WP_006638346.1 1727977..1728264(+) (abrB) [Bacillus sonorensis strain PMC204]
TTGAAATCAATAGGAGTTGTGAGAAAAGTAGATGAACTCGGCCGCATCGTGATGCCGATTGAGTTAAGAAGGGCGCTGGA
TATTTCAATAAAAGACAGCATTGAGTTTTTTGTAGATAAGGATAAAATTGTTTTACAAAAATATAAACCCCATGGGGTCT
GCCTGATAACCGGAGAGATTACATCCGAAAACCGCGAATATGCAAACGGAAAAATCACGCTGAGCCCAGAGGGCGCTGAA
ATGCTGTTGGAAGAACTGAAAACTGCGCTGCATCAGGCAAAATCCTGA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-87)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5P373

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

98.947

0.537