Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   SIS06_RS20125 Genome accession   NZ_CP139188
Coordinates   3825754..3825873 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain H17-16     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3820754..3830873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIS06_RS20100 (SIS06_20100) albG 3820918..3821619 (+) 702 WP_283933866.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  SIS06_RS20105 (SIS06_20105) ywhL 3821625..3823001 (-) 1377 WP_283933867.1 YncE family protein -
  SIS06_RS20110 (SIS06_20110) ywhK 3823040..3824395 (-) 1356 WP_283933868.1 YncE family protein -
  SIS06_RS20115 (SIS06_20115) - 3824392..3824622 (-) 231 WP_125121078.1 hypothetical protein -
  SIS06_RS20120 (SIS06_20120) rapF 3824625..3825770 (+) 1146 WP_283933869.1 response regulator aspartate phosphatase RapF Regulator
  SIS06_RS20125 (SIS06_20125) phrF 3825754..3825873 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  SIS06_RS20130 (SIS06_20130) - 3826100..3826576 (+) 477 WP_015384936.1 hypothetical protein -
  SIS06_RS20135 (SIS06_20135) - 3826734..3827522 (+) 789 WP_029318692.1 membrane protein -
  SIS06_RS20140 (SIS06_20140) - 3828998..3829645 (+) 648 WP_029318689.1 ABC transporter ATP-binding protein -
  SIS06_RS20145 (SIS06_20145) - 3829638..3830201 (+) 564 WP_283933870.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=907668 SIS06_RS20125 WP_009968329.1 3825754..3825873(+) (phrF) [Bacillus subtilis strain H17-16]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=907668 SIS06_RS20125 WP_009968329.1 3825754..3825873(+) (phrF) [Bacillus subtilis strain H17-16]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCCCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487