Detailed information NTG0907378

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: SFA35_RS22430
• Genome accession: NZ_CP139141
• Coordinates: 5002780..5004123 (+)
• Length: 447 a.a.
• NCBI ID: WP_320572806.1
• Uniprot ID: -
• Organism: Pseudomonas sp. HR96
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4997780..5009123

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SFA35_RS22405 (SFA35_22405)	pgeF	4997943..4998677 (-)	735	WP_414058432.1	peptidoglycan editing factor PgeF	-
SFA35_RS22410 (SFA35_22410)	rluD	4998677..4999639 (-)	963	WP_320572799.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
SFA35_RS22415 (SFA35_22415)	-	4999789..5000811 (+)	1023	WP_320572800.1	outer membrane protein assembly factor BamD	-
SFA35_RS22420 (SFA35_22420)	-	5000965..5001198 (+)	234	WP_320572802.1	PP0621 family protein	-
SFA35_RS22425 (SFA35_22425)	pilS	5001188..5002777 (+)	1590	WP_414058433.1	sensor histidine kinase	Regulator
SFA35_RS22430 (SFA35_22430)	pilR	5002780..5004123 (+)	1344	WP_320572806.1	sigma-54 dependent transcriptional regulator	Regulator
SFA35_RS22435 (SFA35_22435)	thiO	5004127..5005251 (-)	1125	WP_320572807.1	glycine oxidase ThiO	-
SFA35_RS22440 (SFA35_22440)	-	5005278..5005673 (-)	396	WP_320572808.1	type IV pilin protein	-
SFA35_RS22445 (SFA35_22445)	-	5005685..5008855 (-)	3171	WP_414058434.1	pilus assembly protein	-

Sequence

Protein

• Length: 447 a.a.
• Molecular weight: 49759.14 Da
• Isoelectric Point: 5.4498

>NTDB_id=907378 SFA35_RS22430 WP_320572806.1 5002780..5004123(+) (pilR) [Pseudomonas sp. HR96]
MSQRQKILIVDDEPDIRELLEITLGRMKLETRSARNCKEARDWLAKEPFDLCLTDMRLPDGTGMELVQHIQQRHPNVPVA
MITAYGSLDTAVTALKAGAFDFLTKPVDLARLRELVGSALRLQAAAPTGEPLIDERLLGDSPPMLALRKQILRLARSQAP
VYISGESGSGKELVARLIHEQGPRSALPFVPVNCGAIPSELMESEFFGHRKGSFTGATEDKPGLFQAANGGTLFLDEVAD
LPLAMQVKLLRVIQEKAVRAVGGQAEVVVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPSLRERREDVELLAN
RVLQRLAQGSGLPPAQLSDEALATLKGYRFPGNVRELENMLERAYTLCEDDRIEASDLRLTESTPSGEAGEPDFAQIDNL
EDYLESIERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1344 bp

>NTDB_id=907378 SFA35_RS22430 WP_320572806.1 5002780..5004123(+) (pilR) [Pseudomonas sp. HR96]
ATGAGCCAACGGCAAAAAATCCTCATCGTCGATGACGAACCGGACATCCGCGAACTGCTGGAAATCACCCTCGGCCGCAT
GAAGCTGGAGACCCGTAGCGCGCGCAACTGCAAGGAAGCCCGCGACTGGCTGGCCAAGGAGCCTTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCACCGGCATGGAGCTGGTGCAGCATATACAGCAGCGCCACCCCAACGTGCCGGTGGCG
ATGATCACTGCCTACGGCAGCCTCGACACCGCCGTCACCGCGCTCAAGGCCGGAGCGTTCGACTTCCTGACCAAGCCGGT
GGATCTGGCGCGCCTGCGCGAACTGGTGGGCAGCGCGCTGCGCCTGCAGGCGGCGGCGCCAACCGGTGAGCCGTTGATCG
ACGAGCGCCTGCTGGGTGACTCGCCGCCCATGCTGGCCCTGCGCAAGCAGATCCTGCGCCTGGCCCGCAGCCAGGCGCCG
GTGTACATCAGCGGCGAGTCGGGCAGCGGCAAGGAGCTGGTGGCGCGCCTGATCCACGAACAGGGCCCGCGCAGCGCCCT
GCCCTTCGTGCCGGTCAACTGTGGCGCGATTCCTTCGGAGCTGATGGAGAGCGAATTCTTCGGCCACCGCAAGGGCAGCT
TCACGGGCGCCACCGAAGACAAGCCGGGGCTGTTCCAGGCCGCCAACGGCGGCACGCTGTTTCTCGACGAAGTGGCCGAC
CTGCCGTTGGCCATGCAGGTCAAGCTGCTGCGGGTGATCCAGGAGAAGGCCGTGCGCGCGGTCGGCGGCCAGGCGGAGGT
GGTGGTGGACGTGCGCATCCTCTGCGCCACCCATAAGGACCTCGCCGCCGAGGTGGCCGCCGGCCGTTTCCGCCAGGACC
TCTACTACCGCCTCAACGTCATCGAGCTGCGCGTGCCATCACTGCGCGAGCGCCGCGAAGACGTCGAATTGCTGGCCAAC
CGCGTGCTGCAACGCCTGGCCCAGGGCAGCGGCCTGCCGCCGGCGCAGCTGAGTGACGAAGCGCTGGCCACCCTCAAGGG
CTACCGCTTCCCGGGCAACGTGCGCGAGCTGGAAAACATGCTGGAGCGGGCCTACACCCTGTGCGAGGACGACCGCATCG
AAGCCAGCGACCTGCGCCTGACCGAGTCGACCCCCAGCGGCGAAGCGGGCGAGCCGGACTTCGCCCAGATCGACAACCTC
GAGGACTACCTGGAGAGCATCGAGCGCAAGCTGATCCTCCAGGCCCTGGAAGAGACTCGCTGGAACCGTACGGCGGCGGC
GCAGCGTTTGAGCCTGTCGTTTCGCTCGATGCGCTATCGATTGAAGAAGCTCGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (404-444)

• Sigma-54 interaction domain (Sigma54_activat) (138-303)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	80.405	99.329	0.799
pilR	Acinetobacter baumannii strain A118	49.892	100	0.517