Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   SFA35_RS22425 Genome accession   NZ_CP139141
Coordinates   5001188..5002777 (+) Length   529 a.a.
NCBI ID   WP_414058433.1    Uniprot ID   -
Organism   Pseudomonas sp. HR96     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4996188..5007777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SFA35_RS22405 (SFA35_22405) pgeF 4997943..4998677 (-) 735 WP_414058432.1 peptidoglycan editing factor PgeF -
  SFA35_RS22410 (SFA35_22410) rluD 4998677..4999639 (-) 963 WP_320572799.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  SFA35_RS22415 (SFA35_22415) - 4999789..5000811 (+) 1023 WP_320572800.1 outer membrane protein assembly factor BamD -
  SFA35_RS22420 (SFA35_22420) - 5000965..5001198 (+) 234 WP_320572802.1 PP0621 family protein -
  SFA35_RS22425 (SFA35_22425) pilS 5001188..5002777 (+) 1590 WP_414058433.1 sensor histidine kinase Regulator
  SFA35_RS22430 (SFA35_22430) pilR 5002780..5004123 (+) 1344 WP_320572806.1 sigma-54 dependent transcriptional regulator Regulator
  SFA35_RS22435 (SFA35_22435) thiO 5004127..5005251 (-) 1125 WP_320572807.1 glycine oxidase ThiO -
  SFA35_RS22440 (SFA35_22440) - 5005278..5005673 (-) 396 WP_320572808.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58699.94 Da        Isoelectric Point: 6.7765

>NTDB_id=907377 SFA35_RS22425 WP_414058433.1 5001188..5002777(+) (pilS) [Pseudomonas sp. HR96]
MVADLFGPGAAQTRRMLRLYHLYRLTIGIALVLLISSEMDNKLLDIANGELFRAGSWTYLILNILVVVLGSVRRPAQVFG
LALADILLLAGLFYAGGGTPSGIGNLMVASVAMSNVLLRGRIGLLVAAVATIAIIYLSFYLNYLRPTPIGDYVQAGTLGV
LCFAVSFMVQALTRLLVTSETLAEQRAHDVTNLEELNALILQRMRTGIMVLDGELRVQMANQGAAGLIGNDELVGQLIAE
YSPQLIERLHQWQTNPTLRLQSIKLKPTGPAVQVSFIALRVREQTQTLIFLEDLSQIAQQAQQLKLAALGRLTASIAHEI
RNPLGAISHAGQLLHESEELTEPDRRLNQIIQDQCKRMNLIIENVLQLSRRRPAEPEMLDLAQWLERFVGDFRASAQGRQ
QLHMYVTDGPLETRMDPHHLTQVLDNLVQNGLRYSGQRNGQAQVWLNLFVEPGNGLPILEVLDDGPGFPADQLQHIFEPF
FTTETKGTGLGLYISRELCESNQAHLDYRPRENGGSCMRITFAHPRRLS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=907377 SFA35_RS22425 WP_414058433.1 5001188..5002777(+) (pilS) [Pseudomonas sp. HR96]
GTGGTCGCTGACCTGTTCGGCCCGGGGGCCGCGCAAACCCGGCGAATGCTGCGCCTTTACCACCTCTACCGCCTGACCAT
CGGCATCGCCCTGGTGCTGCTGATTTCCAGCGAAATGGACAACAAGCTGCTGGATATCGCCAACGGCGAGCTGTTCCGCG
CCGGCAGCTGGACCTACCTGATCCTCAACATCCTGGTGGTGGTACTGGGCAGCGTGCGCCGCCCGGCCCAGGTGTTCGGC
CTGGCGCTGGCCGACATCCTGCTGCTGGCCGGGCTGTTCTATGCCGGCGGCGGCACGCCCAGCGGCATCGGCAACCTGAT
GGTGGCTTCGGTGGCCATGAGCAATGTGCTGCTGCGCGGGCGCATCGGCCTGCTGGTGGCTGCGGTAGCGACCATCGCCA
TCATCTACCTGAGCTTCTACCTCAACTACCTGCGCCCCACGCCGATCGGCGACTACGTGCAGGCCGGCACCCTGGGGGTG
CTGTGCTTTGCCGTGTCGTTCATGGTCCAGGCCCTGACCCGCCTGCTGGTCACCAGTGAGACCCTGGCCGAGCAAAGGGC
CCACGACGTCACCAACCTTGAGGAGCTCAACGCGCTGATCCTGCAGCGCATGCGCACCGGCATCATGGTCCTCGACGGCG
AGTTGCGCGTGCAGATGGCCAACCAGGGCGCCGCCGGATTGATCGGCAACGACGAGCTGGTCGGACAGTTGATCGCCGAA
TACTCGCCGCAGCTGATCGAGCGCCTGCACCAGTGGCAGACCAACCCGACCCTGCGCCTGCAAAGCATCAAGCTCAAGCC
CACCGGCCCGGCCGTGCAGGTCAGCTTCATCGCCCTGCGGGTGCGCGAACAGACCCAGACGCTGATCTTTCTCGAAGACC
TCTCGCAGATCGCCCAGCAGGCCCAGCAGCTCAAGCTGGCCGCGCTGGGCCGGCTGACCGCCAGTATCGCCCACGAGATT
CGCAACCCACTCGGCGCCATCAGCCATGCCGGGCAATTGCTGCACGAGTCCGAGGAACTGACCGAGCCGGACCGACGCCT
CAACCAGATCATCCAGGACCAATGCAAGCGCATGAACCTGATCATCGAGAACGTGCTGCAACTCTCGCGACGGCGTCCGG
CCGAGCCGGAGATGCTCGACCTGGCCCAGTGGCTGGAGCGCTTCGTCGGCGACTTCCGCGCCAGCGCGCAAGGTCGGCAA
CAATTGCACATGTACGTCACCGACGGCCCGCTGGAAACCCGCATGGACCCTCATCACCTGACTCAGGTGCTGGACAACCT
GGTACAGAACGGCCTGCGCTACAGCGGCCAGCGCAACGGCCAGGCCCAGGTCTGGCTGAACCTGTTCGTCGAGCCGGGCA
ACGGCCTGCCGATCCTGGAAGTGCTGGACGACGGCCCGGGCTTTCCTGCCGACCAGTTGCAACACATCTTCGAACCGTTC
TTCACCACCGAAACCAAGGGCACAGGCCTGGGCCTGTATATCTCCCGCGAGCTGTGCGAAAGCAACCAGGCCCACCTGGA
CTACCGCCCCCGTGAAAACGGCGGCAGTTGCATGCGCATCACCTTCGCCCACCCGCGCAGACTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(308-371)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.657

98.11

0.605