Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   SFA35_RS19405 Genome accession   NZ_CP139141
Coordinates   4347743..4349971 (-) Length   742 a.a.
NCBI ID   WP_320572139.1    Uniprot ID   -
Organism   Pseudomonas sp. HR96     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4342743..4354971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SFA35_RS19370 (SFA35_19370) murB 4343135..4344163 (-) 1029 WP_320572133.1 UDP-N-acetylmuramate dehydrogenase -
  SFA35_RS19375 (SFA35_19375) - 4344160..4344624 (-) 465 WP_320572134.1 low molecular weight protein-tyrosine-phosphatase -
  SFA35_RS19380 (SFA35_19380) kdsB 4344624..4345388 (-) 765 WP_320572135.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  SFA35_RS19385 (SFA35_19385) - 4345385..4345570 (-) 186 WP_320572136.1 Trm112 family protein -
  SFA35_RS19390 (SFA35_19390) lpxK 4345608..4346618 (-) 1011 WP_320572137.1 tetraacyldisaccharide 4'-kinase -
  SFA35_RS19395 (SFA35_19395) - 4346618..4347046 (-) 429 WP_320572138.1 biopolymer transporter ExbD -
  SFA35_RS19400 (SFA35_19400) exbB 4347043..4347708 (-) 666 WP_320579125.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  SFA35_RS19405 (SFA35_19405) comA 4347743..4349971 (-) 2229 WP_320572139.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SFA35_RS19410 (SFA35_19410) - 4350117..4350623 (+) 507 WP_320572140.1 DUF2062 domain-containing protein -
  SFA35_RS19415 (SFA35_19415) - 4350620..4351399 (-) 780 WP_320572141.1 ABC transporter permease -
  SFA35_RS19420 (SFA35_19420) - 4351396..4352328 (-) 933 WP_320572142.1 ABC transporter ATP-binding protein -
  SFA35_RS19425 (SFA35_19425) - 4352448..4353071 (-) 624 WP_320572143.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 79859.81 Da        Isoelectric Point: 10.2390

>NTDB_id=907373 SFA35_RS19405 WP_320572139.1 4347743..4349971(-) (comA) [Pseudomonas sp. HR96]
MRSGMIALALGLVTLRWLPALPPGWLLLMIALLAGAALLCRWPGVGLYLSGLCWACLAAHWALDDRLSPGLDGRTLWLEG
VVAGLPETGDGVVRFELVQATSRHGALPARLRLNWRAAPALHAGQRWRLAVTLKRPRGQVNPAGFDYQAWLLARGAGATG
SVKAGQQLSAPQPGWREALRQRLLQVDSQGREGTLAALVLGDKSAVSRQDWQTVQATGTVHLLVISGQHIGLLAGLLYGL
VAGLARLGAWPLRLPWLPCACALAMLGALAYGWLADFQVPVRRACLMLALVLCWRLRYRQLAIGWPLLVAFVVVLLLDPL
ASLQSGFWLSFAAVAVLLLVFAGRLGGWRWWQAWTRAQWLIAIGLLPGLLALALPVSPSAPLANLLAVPWISLLVLPLAL
LGTALLGLWPVLGEALLWLAGGLLNLLFAVLERLGGALPPWHSGERSAWLLVLIGLGALLLLLPAGVPLRVLGWPLLLLA
VLPPRNLVPPGEVEVWQLDVGQGLALVLRTRHHSLVYDAGPAAAGERVLLPVLRTLGVERLDLLILSHAHADHAGGALSL
ARGLPVSRTLAGEPLAMEPELQAQACRSGQRWQWDGVEFALWQWQGATDSNSASCVLHVRAQSGEALLLGGDIEAAAERA
LHASGIDVAAHWLQAPHHGSRTSSTAPLLEAVRPAAVLISRGYGNGFGHPHPQVSARFHALGIRQYDTALHGAIRVQLGR
FGEPFYQRQQRRFWRDDDVPAP

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=907373 SFA35_RS19405 WP_320572139.1 4347743..4349971(-) (comA) [Pseudomonas sp. HR96]
ATGCGCTCAGGGATGATCGCGCTGGCGTTGGGCCTGGTGACCCTGCGCTGGCTGCCGGCGCTGCCGCCGGGTTGGTTGTT
GCTCATGATTGCCCTGCTGGCCGGGGCCGCGTTGCTTTGCCGTTGGCCTGGGGTGGGCCTGTATCTGTCGGGCTTGTGCT
GGGCCTGCCTGGCGGCGCACTGGGCCCTGGACGATCGCCTGTCACCTGGGCTCGATGGCCGCACGCTGTGGCTCGAAGGC
GTCGTGGCAGGGCTGCCCGAGACCGGCGACGGGGTGGTGCGCTTCGAGCTGGTCCAGGCCACTTCGCGGCACGGGGCATT
GCCTGCACGTCTACGCCTGAACTGGCGCGCGGCGCCGGCCTTGCACGCAGGGCAACGCTGGCGGCTGGCGGTGACGCTCA
AGCGCCCCCGTGGCCAGGTCAACCCTGCCGGCTTCGACTACCAGGCCTGGCTGCTGGCCCGTGGGGCTGGCGCCACCGGC
AGCGTCAAGGCGGGGCAGCAGCTGAGCGCGCCGCAACCCGGCTGGCGCGAGGCGCTGCGCCAGCGCCTGCTGCAGGTCGA
CAGCCAGGGCCGGGAGGGCACTCTGGCGGCGCTGGTACTGGGCGACAAATCGGCCGTCTCGCGGCAGGACTGGCAGACGG
TGCAGGCCACCGGTACCGTGCATCTGCTGGTCATCTCCGGCCAGCACATCGGCCTGCTGGCCGGCTTGCTCTATGGCCTG
GTGGCCGGGCTGGCGCGGCTTGGCGCCTGGCCCCTGCGCCTGCCCTGGCTACCCTGCGCCTGCGCCCTGGCCATGCTCGG
TGCCCTGGCCTACGGTTGGCTGGCCGACTTCCAGGTGCCAGTGCGCCGTGCCTGTCTGATGCTGGCGTTGGTGCTGTGCT
GGCGCCTGCGCTACCGCCAGTTGGCCATCGGCTGGCCGCTACTGGTGGCCTTTGTCGTGGTGCTGCTGCTCGACCCGCTG
GCCAGCTTGCAGTCGGGCTTCTGGCTGTCGTTCGCGGCGGTAGCGGTCTTGCTGCTGGTGTTCGCCGGACGGCTCGGCGG
CTGGCGCTGGTGGCAGGCCTGGACCCGCGCCCAATGGCTGATCGCAATCGGCCTGCTGCCCGGGTTGCTGGCCCTGGCGC
TGCCGGTCAGCCCCAGCGCGCCGCTGGCCAACCTGCTGGCGGTGCCCTGGATCAGCCTGCTGGTGTTACCGCTTGCCCTG
CTCGGTACGGCCTTGCTCGGCCTGTGGCCAGTGCTGGGTGAAGCGCTGCTGTGGCTGGCCGGCGGCCTGCTGAACCTGCT
GTTCGCTGTTCTCGAACGCCTGGGCGGGGCGTTGCCGCCTTGGCACTCGGGCGAGCGGTCCGCTTGGCTATTGGTGCTGA
TCGGCCTGGGTGCCTTGCTGCTGCTGTTGCCGGCGGGGGTGCCGTTGCGCGTCCTCGGTTGGCCCTTGCTATTGCTGGCT
GTACTGCCCCCGCGAAACCTGGTGCCGCCGGGCGAGGTGGAGGTCTGGCAGCTGGACGTCGGCCAGGGCCTGGCGCTTGT
CCTGCGCACCCGGCATCACAGTCTGGTCTATGACGCAGGTCCTGCTGCTGCGGGCGAGCGCGTGCTGCTGCCGGTGCTGC
GCACCCTGGGGGTCGAGCGGCTCGACCTGCTCATCCTCAGCCATGCCCACGCCGACCACGCCGGTGGCGCGCTGTCTCTG
GCTCGCGGCCTGCCCGTCTCGCGCACCCTGGCCGGAGAACCTCTGGCCATGGAGCCTGAGCTGCAGGCCCAGGCCTGCCG
CAGCGGCCAGCGCTGGCAGTGGGACGGCGTCGAGTTCGCGCTGTGGCAATGGCAGGGGGCGACAGACAGCAATTCGGCGT
CCTGCGTACTGCACGTACGCGCGCAAAGCGGCGAAGCCTTGCTGCTGGGCGGCGATATCGAAGCGGCGGCCGAGCGCGCG
CTGCACGCCAGCGGTATCGACGTCGCCGCGCACTGGCTGCAGGCTCCCCATCACGGCAGCCGCACGTCCTCCACCGCGCC
GCTGCTGGAGGCGGTGCGGCCTGCGGCGGTGCTGATCTCCCGTGGTTACGGCAACGGTTTCGGTCATCCCCACCCACAGG
TTAGCGCGCGCTTTCACGCATTGGGCATCCGCCAATACGACACCGCGCTGCACGGCGCCATCCGTGTGCAGTTGGGGCGG
TTCGGCGAGCCGTTCTACCAGCGGCAGCAGCGACGCTTCTGGCGTGATGACGATGTGCCAGCCCCGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-674)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

57.26

98.383

0.563
  comA Ralstonia pseudosolanacearum GMI1000

35.442

100

0.4