Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   SFA35_RS19400 Genome accession   NZ_CP139141
Coordinates   4347043..4347708 (-) Length   221 a.a.
NCBI ID   WP_320579125.1    Uniprot ID   -
Organism   Pseudomonas sp. HR96     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4342043..4352708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SFA35_RS19365 (SFA35_19365) - 4342105..4343058 (-) 954 WP_320572132.1 XdhC family protein -
  SFA35_RS19370 (SFA35_19370) murB 4343135..4344163 (-) 1029 WP_320572133.1 UDP-N-acetylmuramate dehydrogenase -
  SFA35_RS19375 (SFA35_19375) - 4344160..4344624 (-) 465 WP_320572134.1 low molecular weight protein-tyrosine-phosphatase -
  SFA35_RS19380 (SFA35_19380) kdsB 4344624..4345388 (-) 765 WP_320572135.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  SFA35_RS19385 (SFA35_19385) - 4345385..4345570 (-) 186 WP_320572136.1 Trm112 family protein -
  SFA35_RS19390 (SFA35_19390) lpxK 4345608..4346618 (-) 1011 WP_320572137.1 tetraacyldisaccharide 4'-kinase -
  SFA35_RS19395 (SFA35_19395) - 4346618..4347046 (-) 429 WP_320572138.1 biopolymer transporter ExbD -
  SFA35_RS19400 (SFA35_19400) exbB 4347043..4347708 (-) 666 WP_320579125.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  SFA35_RS19405 (SFA35_19405) comA 4347743..4349971 (-) 2229 WP_320572139.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SFA35_RS19410 (SFA35_19410) - 4350117..4350623 (+) 507 WP_320572140.1 DUF2062 domain-containing protein -
  SFA35_RS19415 (SFA35_19415) - 4350620..4351399 (-) 780 WP_320572141.1 ABC transporter permease -
  SFA35_RS19420 (SFA35_19420) - 4351396..4352328 (-) 933 WP_320572142.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24299.39 Da        Isoelectric Point: 5.3688

>NTDB_id=907372 SFA35_RS19400 WP_320579125.1 4347043..4347708(-) (exbB) [Pseudomonas sp. HR96]
MTDFFEGVGTVWELVKSGGWMMLPIILSSIAALAITAERLWTLRTSRVSPPQLLSQVWRWLKDKQLNKERLKELRTDSPL
GEILAAGLANSRHGREVMKESIEEAASRVVHEMERYLSTLGTIAAMAPLLGLLGTVIGMIDIFSSFMGTDMTSNPAVLAG
GISKALVTTASGLIVAIPALFFHRLLQRRIDDLVVGMEQEAIKLVEVVQGERDLDQVEDKA

Nucleotide


Download         Length: 666 bp        

>NTDB_id=907372 SFA35_RS19400 WP_320579125.1 4347043..4347708(-) (exbB) [Pseudomonas sp. HR96]
GTGACGGACTTTTTCGAGGGGGTTGGCACTGTGTGGGAACTGGTCAAATCGGGCGGCTGGATGATGCTGCCGATCATCTT
GAGCTCTATCGCAGCACTGGCAATCACCGCCGAACGTCTCTGGACCCTGCGCACCAGCCGGGTTTCTCCACCGCAACTGC
TCAGCCAGGTGTGGCGCTGGCTGAAGGACAAACAGCTGAACAAGGAGCGGCTCAAGGAGCTGCGCACCGACTCGCCCCTG
GGTGAAATCCTCGCCGCAGGCCTGGCCAATTCCAGGCACGGCCGCGAAGTCATGAAGGAAAGCATCGAAGAGGCCGCCTC
GCGGGTGGTCCACGAGATGGAGCGTTACCTCAGCACCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGCCTGCTGG
GTACGGTGATCGGCATGATCGATATCTTCAGCTCGTTCATGGGCACCGACATGACCAGCAACCCCGCCGTGTTGGCCGGT
GGTATCTCCAAGGCGCTGGTGACCACCGCCTCGGGCTTGATCGTGGCCATTCCCGCACTGTTCTTCCACCGTCTGCTGCA
ACGGCGCATCGATGACCTGGTGGTGGGCATGGAGCAGGAGGCGATCAAGCTGGTTGAAGTGGTCCAGGGCGAACGTGATC
TTGATCAAGTCGAGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(77-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

75.355

95.475

0.719