Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   SD427_RS15200 Genome accession   NZ_CP139137
Coordinates   3460137..3460790 (+) Length   217 a.a.
NCBI ID   WP_320558644.1    Uniprot ID   -
Organism   Chryseobacterium sp. JJR-5R     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3455137..3465790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD427_RS15170 (SD427_15170) - 3455440..3456057 (-) 618 WP_320558638.1 DUF5715 family protein -
  SD427_RS15175 (SD427_15175) - 3456498..3457046 (-) 549 WP_320558639.1 hypothetical protein -
  SD427_RS15180 (SD427_15180) - 3457081..3458067 (-) 987 WP_320558640.1 acyl transferase -
  SD427_RS15185 (SD427_15185) - 3458247..3459026 (-) 780 WP_320558641.1 UDP-2,3-diacylglucosamine diphosphatase -
  SD427_RS15190 (SD427_15190) - 3459051..3459497 (-) 447 WP_320558642.1 6-carboxytetrahydropterin synthase -
  SD427_RS15195 (SD427_15195) - 3459607..3459993 (-) 387 WP_320558643.1 thioesterase family protein -
  SD427_RS15200 (SD427_15200) comF 3460137..3460790 (+) 654 WP_320558644.1 ComF family protein Machinery gene
  SD427_RS15205 (SD427_15205) upp 3461008..3461661 (-) 654 WP_320558645.1 uracil phosphoribosyltransferase -
  SD427_RS15210 (SD427_15210) der 3461742..3463052 (-) 1311 WP_056216121.1 ribosome biogenesis GTPase Der -
  SD427_RS15220 (SD427_15220) - 3463580..3463936 (-) 357 WP_320558646.1 hypothetical protein -
  SD427_RS15225 (SD427_15225) - 3464241..3464582 (-) 342 WP_320558647.1 hypothetical protein -
  SD427_RS15230 (SD427_15230) - 3464718..3464951 (-) 234 WP_320558648.1 hypothetical protein -
  SD427_RS15235 (SD427_15235) - 3465008..3465394 (-) 387 WP_320558649.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25075.21 Da        Isoelectric Point: 8.8708

>NTDB_id=907328 SD427_RS15200 WP_320558644.1 3460137..3460790(+) (comF) [Chryseobacterium sp. JJR-5R]
MILDLLFPNRCLECNRIIDGDLLVCNLCFGHLHFTHQAYADITYMQERCKLLFPVEHAFALMKFENENVSRKIIHELKYK
SRKKAGKIIAGWTAERLDFPEKKPDVLVTVPLHPKKLKERGYNQLHLFTETLSEFYNIPFDHGLLKRNHYSKAQALKNKQ
HRLETENTFSVTKDISGKHILLIDDVFTTGNTVANIAWEIIKAGNNKVSVLVMAVDI

Nucleotide


Download         Length: 654 bp        

>NTDB_id=907328 SD427_RS15200 WP_320558644.1 3460137..3460790(+) (comF) [Chryseobacterium sp. JJR-5R]
ATGATTTTAGACCTGCTCTTCCCGAACCGCTGTCTTGAATGCAACCGGATTATTGACGGAGACTTACTTGTTTGTAATCT
TTGTTTCGGGCACCTCCATTTTACCCACCAGGCATATGCTGATATTACGTACATGCAAGAAAGATGTAAACTGCTGTTCC
CTGTAGAACACGCTTTTGCCCTGATGAAATTTGAAAATGAAAATGTCAGCAGGAAAATAATCCACGAACTAAAATATAAA
AGCAGGAAAAAAGCCGGGAAAATTATTGCAGGCTGGACCGCAGAACGGCTGGATTTTCCAGAGAAAAAGCCGGACGTTTT
GGTAACGGTGCCGCTGCATCCGAAAAAGTTAAAGGAAAGAGGATACAATCAGCTGCATTTATTTACGGAAACCCTATCGG
AATTCTACAATATTCCTTTTGACCATGGTCTGCTTAAGAGAAACCATTATTCAAAAGCGCAGGCATTAAAAAACAAGCAG
CACCGCCTGGAAACTGAAAATACATTTTCCGTTACAAAAGATATTTCAGGAAAGCATATTCTACTGATTGACGATGTATT
TACCACCGGAAATACGGTAGCCAACATAGCATGGGAAATCATAAAAGCTGGAAATAATAAAGTAAGCGTTCTGGTCATGG
CTGTAGATATTTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

52.315

99.539

0.521