Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   SDC64_RS14875 Genome accession   NZ_CP139048
Coordinates   3121919..3123349 (+) Length   476 a.a.
NCBI ID   WP_005083966.1    Uniprot ID   N9F1D8
Organism   Acinetobacter haemolyticus strain JS-1us     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3116919..3128349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDC64_RS14855 (SDC64_14855) thrC 3117203..3118342 (+) 1140 WP_004637599.1 threonine synthase -
  SDC64_RS14860 (SDC64_14860) pbpG 3118402..3119466 (-) 1065 WP_320532696.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  SDC64_RS14865 (SDC64_14865) - 3119677..3120312 (+) 636 WP_005083960.1 response regulator -
  SDC64_RS14870 (SDC64_14870) pilS 3120331..3121896 (+) 1566 WP_017395042.1 PAS domain-containing sensor histidine kinase Regulator
  SDC64_RS14875 (SDC64_14875) pilR 3121919..3123349 (+) 1431 WP_005083966.1 sigma-54 dependent transcriptional regulator Regulator
  SDC64_RS14880 (SDC64_14880) - 3123388..3124554 (-) 1167 WP_008942249.1 S41 family peptidase -
  SDC64_RS14885 (SDC64_14885) gpmI 3124564..3126108 (-) 1545 WP_017395274.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  SDC64_RS14890 (SDC64_14890) lptG 3126233..3127303 (-) 1071 WP_004637591.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 53565.53 Da        Isoelectric Point: 6.1502

>NTDB_id=906971 SDC64_RS14875 WP_005083966.1 3121919..3123349(+) (pilR) [Acinetobacter haemolyticus strain JS-1us]
MATKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVQHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLIQKALNRPRPEQEAAETALENKLLIGRSAPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILL
LANHFIQRICQEWELPAKTLSSRAEQFLLQQYFPGNVRELRNIIERAITLSDDETIDLAHLQTAPLRSPISMPSAPSYSQ
EEVEQPQYTSPSTSSKKLPPEGLERYLENIEKEVLLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEEDDT

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=906971 SDC64_RS14875 WP_005083966.1 3121919..3123349(+) (pilR) [Acinetobacter haemolyticus strain JS-1us]
ATGGCAACTAAACAACCACTCGTCTTGCTCGTAGACGACGAAGAGGACTTGTGTCTTCTCATGCAAATGACACTTGCACG
TATGGGAATTAAGACACATTTGGCTTATCGTGTAGAGCAAGCAAAAAAATTCTTTACTGAATTTCAATATGATGCATGTT
TAACTGATTTAAATCTTCCAGACGGCAACGGTTTAGATCTCGTCCAACATGTCACCCAAAATTACCCAAATACTCCGATC
GCTGTGCTGACAGCCTATGGCAATATGGACATTGCGATTGCAGCATTAAAAGCTGGGGCATTTGACTTCGTTAGCAAACC
AGTCAACCAAGTGCATTTGGATCAATTGATTCAAAAAGCATTGAATCGACCACGACCTGAGCAAGAAGCGGCTGAAACAG
CCCTAGAAAATAAACTACTGATCGGACGTTCTGCGCCAATTCAACAACTGCGCATTGCATTAAAGAAAATCGCGCGATCA
CAAGCGCCTGTCTTTATCACCGGGGAGTCGGGAACTGGAAAAGAAGTTGTTGCCAACTTGGTTCATCGCTTAAGTAATCG
TAGTGAAGGGCCTTTTATTGCCATAAACTGCGGTGCAATTCCAACAGAACTGATGGAAAGCGAGCTTTTCGGGCACAAAA
AAGGCAGTTTCACTGGGGCGACCCAAGATAAACAAGGTTTAATTTTATCAGCACATGGCGGTAGTTTATTTCTCGATGAA
ATCGCTGAACTGCCACTCAACATGCAAGTAAAATTATTGCGTGCAGTGCAAGAAAAGAAAATCCGCCCTGTAGGCTCAGA
CCAAGAAATTGATGTCGATTTCCGTGTGATTAGTGCCAGTCACCAAGATCTTGAGTTACTGGTTCAGCAAGGACGATTCC
GACAGGATTTATTTTTCCGTATCCACGTTATGGATATTGTACTCCCACCATTACGTGAACGTGGACAGGACATCCTGTTA
TTAGCGAATCATTTTATCCAAAGAATTTGTCAAGAATGGGAACTGCCTGCCAAGACGTTATCGTCTCGTGCAGAGCAATT
TTTATTACAACAATATTTTCCTGGTAATGTGCGCGAACTACGCAATATTATTGAACGTGCAATCACGCTCAGCGATGATG
AAACGATTGATTTAGCGCACTTACAAACAGCGCCATTACGCAGTCCAATTTCAATGCCATCAGCGCCATCTTATAGCCAA
GAAGAAGTTGAGCAGCCACAATACACCAGCCCAAGCACAAGTTCGAAAAAACTTCCACCTGAAGGTTTAGAGCGTTATTT
AGAAAATATTGAAAAAGAAGTGCTACTTAATGCATTAAATCTAACTCATTGGAATCGAACGCTCGCCGCGAAGAAACTCG
GGATGACCTTCCGCTCTTTGCGTTATCGTTTGAAAAAATTCGGATTAGATACTGAAGAAGATGACACCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(427-467)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9F1D8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

84.454

100

0.845
  pilR Pseudomonas aeruginosa PAK

51.62

97.269

0.502