Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   SDC64_RS14870 Genome accession   NZ_CP139048
Coordinates   3120331..3121896 (+) Length   521 a.a.
NCBI ID   WP_017395042.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain JS-1us     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3115331..3126896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDC64_RS14850 (SDC64_14850) - 3115843..3117144 (+) 1302 WP_026056262.1 homoserine dehydrogenase -
  SDC64_RS14855 (SDC64_14855) thrC 3117203..3118342 (+) 1140 WP_004637599.1 threonine synthase -
  SDC64_RS14860 (SDC64_14860) pbpG 3118402..3119466 (-) 1065 WP_320532696.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  SDC64_RS14865 (SDC64_14865) - 3119677..3120312 (+) 636 WP_005083960.1 response regulator -
  SDC64_RS14870 (SDC64_14870) pilS 3120331..3121896 (+) 1566 WP_017395042.1 PAS domain-containing sensor histidine kinase Regulator
  SDC64_RS14875 (SDC64_14875) pilR 3121919..3123349 (+) 1431 WP_005083966.1 sigma-54 dependent transcriptional regulator Regulator
  SDC64_RS14880 (SDC64_14880) - 3123388..3124554 (-) 1167 WP_008942249.1 S41 family peptidase -
  SDC64_RS14885 (SDC64_14885) gpmI 3124564..3126108 (-) 1545 WP_017395274.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59527.66 Da        Isoelectric Point: 6.5501

>NTDB_id=906970 SDC64_RS14870 WP_017395042.1 3120331..3121896(+) (pilS) [Acinetobacter haemolyticus strain JS-1us]
MLGKVASSVSQTIYQLGMWYSGYRLIISVCLLLIFLLTAEQLTTNYLYPTLYSYTLIVYIALNVSQLLFLKLFPTHVNKQ
LIAIFLVDVICLSTITFATGGPNLQLSLLYVIIIFASAILLNAQLSLVVTLLAVIMIVYQRFLGNLFDYNNLNHLSNSLL
LVFLFLVVYAIGRIAVQRFKILEALTFHQSIEIHQLQNINRYILEQIEDGYLVLDESNHIVLTNPAANTLLGIHLPVSHE
KTPLIKWQPDLFELIKFSDLEDGEEFTFESQQSLYTVHVRVKHLVVPEQALVLLILKDAQKLTQRVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELFNESDAHQQQMLTRMIRKQAKRIDRIVEDTLAMARNKPTEPQNIHLMEFFESLFEEDLVDVK
HMIQLELLENIQILFDDKQLRQVLINLVRNALRHNASDIPYIEIKVHAEETKVRIDVIDFGLGVAKRDLSQLFKPFFSTE
IKGTGLGLYLSHSFCEANHAKLTYVERQQGACFRIECSIIN

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=906970 SDC64_RS14870 WP_017395042.1 3120331..3121896(+) (pilS) [Acinetobacter haemolyticus strain JS-1us]
ATGTTGGGAAAAGTTGCATCTTCGGTGTCACAAACCATTTACCAGCTTGGGATGTGGTATAGCGGATATCGCCTCATTAT
TTCCGTATGCCTATTGCTCATTTTCTTGTTAACTGCTGAGCAACTGACCACCAATTATCTTTACCCAACATTGTATTCAT
ATACGCTGATTGTCTATATTGCATTAAATGTCAGTCAGCTTTTATTTCTTAAATTATTTCCGACCCACGTGAATAAACAG
CTGATTGCGATCTTTCTTGTCGATGTCATCTGTTTAAGTACCATTACCTTTGCAACAGGCGGGCCAAACTTACAGCTCAG
TTTGCTTTATGTCATTATTATTTTTGCCTCGGCAATTTTATTGAATGCTCAGCTTTCTCTAGTAGTAACGCTGCTCGCTG
TTATCATGATTGTGTATCAGCGTTTTCTGGGAAATTTATTTGACTACAACAATTTAAATCATCTCAGTAATAGCCTGCTG
TTGGTATTTTTATTCTTGGTGGTATATGCCATAGGGCGTATTGCAGTACAGCGTTTTAAAATTTTAGAAGCCCTTACTTT
TCATCAATCCATTGAAATTCATCAACTCCAGAACATTAACCGTTATATCTTGGAGCAAATTGAGGATGGATATCTGGTTT
TAGATGAAAGTAATCATATTGTTTTAACCAATCCTGCTGCCAATACATTATTAGGTATTCATTTACCTGTTTCCCATGAA
AAAACGCCCTTAATCAAATGGCAACCCGATCTATTTGAACTGATCAAATTCAGTGACCTAGAAGATGGTGAAGAGTTCAC
TTTTGAGTCACAACAAAGTTTGTATACCGTCCATGTACGTGTCAAACATTTGGTCGTACCTGAACAAGCATTAGTTTTAT
TAATTCTCAAAGATGCTCAGAAATTAACTCAGCGTGTACAACAACTCAAACTAGCGGCACTTGGTCAACTTTCGGCCAGT
ATCGCACATGAAATTCGTAACCCCTTAGCGGCGATTGTGCAAGCCAATGAGCTTTTTAATGAAAGCGATGCGCATCAACA
ACAAATGCTCACTCGTATGATTCGTAAACAAGCAAAACGTATCGATCGGATTGTAGAAGATACTTTGGCAATGGCACGCA
ATAAACCGACTGAACCACAAAATATTCATCTTATGGAGTTCTTTGAAAGTTTATTTGAAGAGGATCTAGTCGATGTCAAA
CACATGATCCAATTAGAGCTTTTAGAGAATATTCAAATCTTATTTGATGACAAACAGTTGCGCCAAGTGCTGATCAATTT
GGTGAGAAATGCATTAAGACACAACGCATCGGATATACCTTATATCGAAATTAAAGTACACGCTGAAGAGACTAAAGTTC
GAATTGATGTTATCGATTTTGGTTTAGGGGTAGCAAAAAGAGACCTTTCTCAACTGTTTAAACCATTTTTTAGTACCGAA
ATCAAAGGAACTGGTTTAGGATTGTATTTGTCTCATAGTTTCTGTGAGGCGAATCATGCAAAGCTCACTTATGTAGAGCG
ACAACAAGGAGCATGCTTCAGGATTGAATGCTCAATAATTAATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

65.437

98.848

0.647