Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SDC64_RS13125 Genome accession   NZ_CP139048
Coordinates   2762533..2762958 (-) Length   141 a.a.
NCBI ID   WP_005092347.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain JS-1us     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2757533..2767958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDC64_RS13095 (SDC64_13095) - 2757614..2757883 (-) 270 WP_004637957.1 HPr family phosphocarrier protein -
  SDC64_RS13100 (SDC64_13100) rapZ 2757880..2758731 (-) 852 WP_004637956.1 RNase adapter RapZ -
  SDC64_RS13105 (SDC64_13105) panC 2758760..2759605 (-) 846 WP_004637955.1 pantoate--beta-alanine ligase -
  SDC64_RS13110 (SDC64_13110) panB 2759609..2760418 (-) 810 WP_320532606.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  SDC64_RS13115 (SDC64_13115) folK 2760458..2760946 (-) 489 WP_004637953.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  SDC64_RS13120 (SDC64_13120) pcnB 2760943..2762394 (-) 1452 WP_320532607.1 polynucleotide adenylyltransferase PcnB -
  SDC64_RS13125 (SDC64_13125) comEA 2762533..2762958 (-) 426 WP_005092347.1 ComEA family DNA-binding protein Machinery gene
  SDC64_RS13130 (SDC64_13130) mazG 2762927..2763733 (-) 807 WP_320532608.1 nucleoside triphosphate pyrophosphohydrolase -
  SDC64_RS13135 (SDC64_13135) - 2763830..2764606 (+) 777 WP_320532609.1 SDR family oxidoreductase -
  SDC64_RS13140 (SDC64_13140) - 2764957..2765385 (+) 429 WP_005085309.1 hypothetical protein -
  SDC64_RS13145 (SDC64_13145) - 2765512..2767818 (-) 2307 WP_004637947.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 16196.73 Da        Isoelectric Point: 10.6493

>NTDB_id=906962 SDC64_RS13125 WP_005092347.1 2762533..2762958(-) (comEA) [Acinetobacter haemolyticus strain JS-1us]
MKLPQLRSKTNFLLLIILWLGVIPQLNAKQFDQSYIQWKTQQQKHDQQLARQDDQYYLSRPTQQQNVKPVSSSVNISGDK
ISLNQANLQQLQSLSGVGEKKAQAIIEYRQKHGAFKALDELMNVKGIGPKLLEKNRSRLIL

Nucleotide


Download         Length: 426 bp        

>NTDB_id=906962 SDC64_RS13125 WP_005092347.1 2762533..2762958(-) (comEA) [Acinetobacter haemolyticus strain JS-1us]
ATGAAATTGCCGCAGTTACGCAGCAAAACTAACTTTTTATTATTGATTATTTTATGGTTGGGGGTAATTCCCCAGCTCAA
TGCTAAACAGTTTGATCAATCCTATATACAATGGAAAACACAGCAACAAAAACATGATCAGCAATTGGCTAGACAAGATG
ACCAATATTATTTATCTAGACCGACCCAGCAACAAAATGTGAAACCTGTTTCATCTTCTGTAAATATTTCAGGCGATAAA
ATTAGCTTAAATCAAGCGAACTTACAGCAGTTGCAAAGTTTAAGTGGTGTAGGTGAGAAAAAAGCCCAAGCGATTATTGA
ATATCGACAAAAACATGGTGCATTTAAAGCATTAGATGAACTCATGAATGTCAAAGGAATTGGGCCGAAACTGCTTGAAA
AGAATAGGTCGAGACTTATTTTATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(79-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

50.37

95.745

0.482
  comEA Acinetobacter baumannii D1279779

48.507

95.035

0.461
  comEA Acinetobacter baylyi ADP1

44.118

96.454

0.426