Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   SDC64_RS06500 Genome accession   NZ_CP139048
Coordinates   1393456..1394163 (-) Length   235 a.a.
NCBI ID   WP_320533313.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain JS-1us     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1388456..1399163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDC64_RS06485 (SDC64_06485) - 1389112..1390704 (+) 1593 WP_320533311.1 urea amidolyase family protein -
  SDC64_RS06490 (SDC64_06490) - 1390688..1392418 (+) 1731 WP_320533312.1 biotin carboxylase N-terminal domain-containing protein -
  SDC64_RS06495 (SDC64_06495) - 1392474..1393253 (-) 780 WP_004639486.1 M48 family metallopeptidase -
  SDC64_RS06500 (SDC64_06500) crp 1393456..1394163 (-) 708 WP_320533313.1 cAMP-activated global transcriptional regulator CRP Regulator
  SDC64_RS06505 (SDC64_06505) - 1394310..1394732 (+) 423 WP_004639481.1 OsmC family protein -
  SDC64_RS06510 (SDC64_06510) - 1394797..1395597 (-) 801 WP_320533480.1 peptidoglycan DD-metalloendopeptidase family protein -
  SDC64_RS06515 (SDC64_06515) clpB 1395861..1398440 (+) 2580 WP_004639477.1 ATP-dependent chaperone ClpB -
  SDC64_RS06520 (SDC64_06520) - 1398610..1399035 (+) 426 WP_004639475.1 hypothetical protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26646.28 Da        Isoelectric Point: 4.8321

>NTDB_id=906954 SDC64_RS06500 WP_320533313.1 1393456..1394163(-) (crp) [Acinetobacter haemolyticus strain JS-1us]
MTSNFSHLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESRSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEKNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYVVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEENTFPEDEYDDED

Nucleotide


Download         Length: 708 bp        

>NTDB_id=906954 SDC64_RS06500 WP_320533313.1 1393456..1394163(-) (crp) [Acinetobacter haemolyticus strain JS-1us]
ATGACTTCAAATTTTTCACATCTTAGCACTGATGCTTTGTCTCCAGGCCAACTACCTGAATCAGTAAAAGCTTTGCTAAA
ACGTGCTCATATTAACAGATACCCTAAACGCACCACGATTGTTGACGCTGGAACGGAATCAAGATCACTGTATTTAATTT
TAAAAGGTTCAGTATCAATTATTTTACGTGAAGATGATGAACGTGAAATCGTTGTTGCTTATTTGAACCCTGGGGACTTC
TTTGGTGAGATGGGTCTTTTTGAAAAGAACCCTCAACGTACTGCTGAAGTACGCACTCGAGATGTATGCGAAATTGCAGA
GATTTCTTATGACAATTTCCATGAATTAAGTAAACAGTATCCTGATTTAAGTTACGTAGTATTTGCTCAACTGGTGCGTC
GTCTTAAAAACACAACTCGTAAAGTAACTGACCTTGCCTTTATCGACGTTTCAGGTCGTATTGCACGTTGCTTAATCGAC
TTATCTGCTCAACCAGAGGCAATGATTTTACCGAATGGTCGTCAGATTCGTATCACTCGTCAAGAGATTGGTCGTATTGT
CGGTTGCTCTCGTGAAATGGTTGGTCGTGTCCTCAAAACACTTGAAGACCAAGGCATGATCCAAACTGATGGTAAAGCAA
TTTTAATTTTTGATGCGTCTTTAGAGGAAAATACCTTTCCTGAAGATGAATATGATGATGAAGATTGA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

93.191

100

0.932
  crp Vibrio cholerae strain A1552

47.805

87.234

0.417
  crp Haemophilus influenzae Rd KW20

49.231

82.979

0.409