Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   SDC64_RS03415 Genome accession   NZ_CP139048
Coordinates   708795..709178 (+) Length   127 a.a.
NCBI ID   WP_004640629.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain JS-1us     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 703795..714178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDC64_RS03390 (SDC64_03390) - 704403..704855 (+) 453 WP_171055811.1 SRPBCC family protein -
  SDC64_RS03395 (SDC64_03395) - 705042..705386 (+) 345 WP_004640637.1 zinc ribbon domain-containing protein YjdM -
  SDC64_RS03400 (SDC64_03400) - 705546..705881 (+) 336 WP_004640635.1 YegP family protein -
  SDC64_RS03405 (SDC64_03405) - 705943..707658 (-) 1716 WP_320533045.1 proline--tRNA ligase -
  SDC64_RS03410 (SDC64_03410) - 707861..708517 (-) 657 WP_004640632.1 hypothetical protein -
  SDC64_RS03415 (SDC64_03415) pilG 708795..709178 (+) 384 WP_004640629.1 twitching motility response regulator PilG Regulator
  SDC64_RS03420 (SDC64_03420) - 709200..709562 (+) 363 WP_004640626.1 PleD family two-component system response regulator -
  SDC64_RS03425 (SDC64_03425) - 709611..710147 (+) 537 WP_004640625.1 chemotaxis protein CheW -
  SDC64_RS03430 (SDC64_03430) - 710195..712276 (+) 2082 WP_004640623.1 methyl-accepting chemotaxis protein -
  SDC64_RS16915 - 712434..712955 (+) 522 Protein_661 Hpt domain-containing protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14199.33 Da        Isoelectric Point: 4.7278

>NTDB_id=906950 SDC64_RS03415 WP_004640629.1 708795..709178(+) (pilG) [Acinetobacter haemolyticus strain JS-1us]
MEDKFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSLNYQ
NIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLSAIRNHVSA

Nucleotide


Download         Length: 384 bp        

>NTDB_id=906950 SDC64_RS03415 WP_004640629.1 708795..709178(+) (pilG) [Acinetobacter haemolyticus strain JS-1us]
ATGGAAGATAAATTTCAAAATTTAAAGGTGATGGTGATTGACGATTCTAAAACGATTCGTCGTACAGCTGAGACCTTATT
ACAACGTGAAGGTTGTGAGGTAATTACTGCAGTTGACGGTTTTGAAGCATTATCAAAAATTGCTGAAGCAAATCCAGATA
TTGTTTTTGTGGATATTATGATGCCGCGTTTAGACGGTTATCAAACCTGTGCATTGATCAAGAATTCATTAAATTATCAA
AATATTCCAGTCATCATGCTTTCAAGCAAAGACGGTTTATTTGATCAAGCAAAAGGGCGTGTTGTGGGGTCTGATGAATA
TTTAACTAAGCCGTTTAGTAAGGATGAGCTGTTGAGTGCGATCCGTAACCATGTCAGCGCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

96.85

100

0.969
  vicR Streptococcus mutans UA159

42.735

92.126

0.394
  pilH Synechocystis sp. PCC 6803

41.228

89.764

0.37