Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   SDC64_RS01665 Genome accession   NZ_CP139048
Coordinates   338819..339316 (+) Length   165 a.a.
NCBI ID   WP_004641267.1    Uniprot ID   N9FBJ9
Organism   Acinetobacter haemolyticus strain JS-1us     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333819..344316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDC64_RS01655 (SDC64_01655) - 333994..334782 (+) 789 WP_005086993.1 hypothetical protein -
  SDC64_RS01660 (SDC64_01660) - 334799..338809 (+) 4011 WP_320532905.1 PilC/PilY family type IV pilus protein -
  SDC64_RS01665 (SDC64_01665) comE 338819..339316 (+) 498 WP_004641267.1 type IV pilin protein Machinery gene
  SDC64_RS01670 (SDC64_01670) - 339310..339768 (+) 459 WP_004641266.1 type IV pilin protein -
  SDC64_RS01675 (SDC64_01675) - 340044..340640 (+) 597 WP_042874505.1 Tfp pilus assembly protein FimT/FimU -
  SDC64_RS01680 (SDC64_01680) pilV 340637..341125 (+) 489 WP_320532906.1 type IV pilus modification protein PilV Machinery gene
  SDC64_RS01685 (SDC64_01685) comB 341310..342257 (+) 948 WP_252716628.1 PilW family protein Machinery gene
  SDC64_RS01690 (SDC64_01690) pilX 342260..342994 (+) 735 WP_320532907.1 pilus assembly PilX N-terminal domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17952.36 Da        Isoelectric Point: 8.4798

>NTDB_id=906940 SDC64_RS01665 WP_004641267.1 338819..339316(+) (comE) [Acinetobacter haemolyticus strain JS-1us]
MQNNRLTSAQGFTLVELMIVVVIVAIFAAIAIPSYQEYVRRAIAAQAQQEMQRISTELERSKARNFNYLGFPSTVVLPVG
ATGAAIQYTITVSDGADVSRSLTDSAATGQSWVMRGIWKTAETTNVDNFSFLMTSSGVRCKNKTKANITATNVDNATCGT
GREEW

Nucleotide


Download         Length: 498 bp        

>NTDB_id=906940 SDC64_RS01665 WP_004641267.1 338819..339316(+) (comE) [Acinetobacter haemolyticus strain JS-1us]
ATGCAAAATAATCGGTTAACCTCTGCTCAAGGGTTTACTTTGGTTGAACTAATGATTGTTGTCGTTATTGTTGCAATTTT
TGCAGCAATAGCGATACCAAGTTATCAAGAATATGTTCGGCGTGCGATTGCTGCGCAAGCCCAGCAGGAAATGCAACGCA
TATCAACTGAACTGGAAAGAAGTAAAGCTAGAAACTTCAATTATTTGGGGTTTCCGAGTACGGTTGTTTTGCCCGTTGGT
GCAACAGGTGCTGCGATTCAATATACGATTACTGTTAGTGACGGAGCAGATGTGAGTAGATCACTAACAGATAGTGCAGC
AACAGGACAAAGCTGGGTCATGCGCGGTATTTGGAAAACAGCCGAAACAACAAATGTGGATAACTTTAGTTTTTTGATGA
CCAGTTCAGGAGTCCGCTGTAAAAATAAAACCAAGGCAAACATTACAGCAACGAATGTCGATAATGCGACATGTGGTACA
GGGCGAGAAGAATGGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(33-97)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9FBJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

43.243

100

0.485
  pilY2 Acinetobacter baumannii D1279779

45.455

100

0.455