Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   SDC64_RS01685 Genome accession   NZ_CP139048
Coordinates   341310..342257 (+) Length   315 a.a.
NCBI ID   WP_252716628.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain JS-1us     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336310..347257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDC64_RS01665 (SDC64_01665) comE 338819..339316 (+) 498 WP_004641267.1 type IV pilin protein Machinery gene
  SDC64_RS01670 (SDC64_01670) - 339310..339768 (+) 459 WP_004641266.1 type IV pilin protein -
  SDC64_RS01675 (SDC64_01675) - 340044..340640 (+) 597 WP_042874505.1 Tfp pilus assembly protein FimT/FimU -
  SDC64_RS01680 (SDC64_01680) pilV 340637..341125 (+) 489 WP_320532906.1 type IV pilus modification protein PilV Machinery gene
  SDC64_RS01685 (SDC64_01685) comB 341310..342257 (+) 948 WP_252716628.1 PilW family protein Machinery gene
  SDC64_RS01690 (SDC64_01690) pilX 342260..342994 (+) 735 WP_320532907.1 pilus assembly PilX N-terminal domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34003.50 Da        Isoelectric Point: 7.2177

>NTDB_id=906942 SDC64_RS01685 WP_252716628.1 341310..342257(+) (comB) [Acinetobacter haemolyticus strain JS-1us]
MVSLALGLIIVAAATQLFITGLTSYKLQKAMAHIQDSASFGLNFIVDDIRKANLSSPMPAVNDQIAYSGIILTSKNVGSK
INLNCTACFSDNKLTSFGNANVTGLANDQLLIRYRSPQDGFDCSGNTIATDTFVVQRYFVGSTSTDLRQSLRCQAAQYTQ
AQLDAATEANPLLLSWSASQVILPNVDFFQVRLGYIDGELESANSSLAYTDIKNYMALSAKTKNIDGVVQTVRPHVHAVQ
IGVLVQSADSAGHQSIIKDRNKQPFQVLGTQVTLTPTYQDTRLRQVVDQTISLRNAMGWVTEGCDSSKTTCTGGA

Nucleotide


Download         Length: 948 bp        

>NTDB_id=906942 SDC64_RS01685 WP_252716628.1 341310..342257(+) (comB) [Acinetobacter haemolyticus strain JS-1us]
ATGGTCTCTTTGGCTCTAGGCTTAATTATTGTCGCTGCAGCAACACAATTATTTATTACTGGCCTGACCAGTTATAAGCT
ACAAAAGGCGATGGCACATATTCAGGATAGCGCAAGTTTCGGATTAAACTTCATCGTTGATGATATTCGTAAAGCAAATT
TGAGCTCGCCGATGCCAGCGGTCAATGATCAAATTGCTTATTCAGGAATCATTCTAACCTCAAAGAATGTTGGATCAAAA
ATTAATTTAAATTGCACGGCATGCTTTTCTGATAACAAATTAACCAGCTTTGGAAATGCCAATGTTACAGGTCTAGCTAA
TGATCAGTTGTTAATTCGTTATCGATCTCCACAAGATGGTTTCGATTGTTCTGGAAATACTATAGCAACTGATACATTTG
TTGTTCAGCGTTATTTTGTTGGTTCAACATCAACTGATTTACGTCAATCTCTGCGTTGTCAAGCTGCTCAATATACACAA
GCACAATTAGATGCTGCCACTGAAGCAAATCCTCTGCTATTAAGTTGGTCAGCAAGTCAGGTGATTTTACCAAATGTAGA
CTTTTTTCAAGTTCGTCTAGGTTATATCGATGGTGAGCTTGAGAGCGCAAATAGCTCACTTGCTTATACTGATATAAAAA
ATTATATGGCTTTGAGTGCTAAAACCAAGAATATAGATGGCGTTGTTCAAACTGTACGCCCACATGTGCATGCTGTTCAA
ATAGGTGTATTGGTCCAATCTGCCGATTCTGCGGGGCATCAATCTATTATCAAAGATCGGAATAAACAGCCATTTCAGGT
ACTTGGTACTCAGGTAACGTTAACACCAACCTATCAAGATACTCGATTACGTCAGGTTGTAGATCAAACAATATCACTTC
GTAATGCAATGGGTTGGGTAACTGAAGGGTGTGATAGCAGTAAAACGACTTGTACGGGAGGGGCTTGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(137-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Acinetobacter baylyi ADP1

49.201

99.365

0.489