Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   SJY35_RS14335 Genome accession   NZ_CP139001
Coordinates   3131727..3133070 (+) Length   447 a.a.
NCBI ID   WP_396587314.1    Uniprot ID   -
Organism   Bermanella sp. R86510     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3126727..3138070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJY35_RS14310 trmD 3126738..3127490 (-) 753 WP_396587309.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  SJY35_RS14315 rimM 3127493..3128023 (-) 531 WP_396587310.1 ribosome maturation factor RimM -
  SJY35_RS14320 rpsP 3128048..3128305 (-) 258 WP_396587311.1 30S ribosomal protein S16 -
  SJY35_RS14325 - 3128461..3130092 (-) 1632 WP_396587312.1 NAD+ synthase -
  SJY35_RS14330 - 3130163..3131710 (+) 1548 WP_396587313.1 sensor histidine kinase -
  SJY35_RS14335 pilR 3131727..3133070 (+) 1344 WP_396587314.1 sigma-54-dependent transcriptional regulator Regulator
  SJY35_RS14340 - 3133147..3133740 (+) 594 WP_396587315.1 GspH/FimT family pseudopilin -
  SJY35_RS14345 - 3133872..3134363 (+) 492 WP_396587316.1 GspH/FimT family pseudopilin -
  SJY35_RS14350 - 3134385..3134993 (+) 609 WP_396587317.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  SJY35_RS14355 - 3134993..3135826 (+) 834 WP_396587318.1 PilW family protein -
  SJY35_RS14360 - 3135844..3136335 (+) 492 WP_396587319.1 hypothetical protein -
  SJY35_RS14365 - 3136344..3136652 (+) 309 WP_396587320.1 hypothetical protein -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 50094.47 Da        Isoelectric Point: 5.2521

>NTDB_id=906695 SJY35_RS14335 WP_396587314.1 3131727..3133070(+) (pilR) [Bermanella sp. R86510]
MQRILILDDEPDILNLFLLTIKRMGLEATTAKTLAEAKQALNDQEFVLCLTDMRLPDGSGMDLIKYMQKHFPKLPIVMIT
AYGSMDVAIEAMKHGAFDFLSKPVELDKLRSIIESAISLDEQSSEQDTSLDTGIIGYSKNIDKLHKQIQKVARSHAPVFI
HGESGSGKELVARAIHNLSPRGEKPFITVNCGAIPSELMESEFFGHKKGAFTGASNNKDGFFQAANGGTLFLDEVADLPL
AMQVKLLRAIQESVVRPVGSENEQKVDVRILSASHKDLQKQVRDQQFREDLFYRLDVIRIEVPALRQRLDDIPVLAQFIL
ERLTKSLDMQDMTLASNAIKALQDYPFPGNVRELENILQRAITLCDNSVIEESDLQLNAAPQAAAQQDSSHNSLPAGMTL
EEYLENIERDIIEQALAQCRWNKTATAEQLGMSFRSLRYRLKKLKID

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=906695 SJY35_RS14335 WP_396587314.1 3131727..3133070(+) (pilR) [Bermanella sp. R86510]
ATGCAGCGCATTCTCATTCTCGACGACGAACCCGATATACTAAATTTGTTTTTGTTAACCATTAAGCGAATGGGACTTGA
GGCGACAACTGCAAAAACCTTAGCCGAAGCTAAGCAAGCGCTAAATGATCAAGAGTTTGTACTATGCCTTACCGATATGC
GCCTACCAGATGGTTCGGGTATGGATTTAATCAAATACATGCAAAAGCATTTCCCTAAACTGCCCATTGTTATGATTACC
GCATACGGCAGCATGGATGTTGCTATAGAAGCTATGAAGCATGGTGCCTTTGACTTTTTATCCAAGCCTGTTGAGCTGGA
TAAACTACGTTCAATTATAGAAAGCGCCATTAGCTTAGATGAGCAAAGCAGTGAGCAAGACACCAGCCTCGATACCGGAA
TTATTGGTTACTCGAAGAACATAGACAAACTACACAAACAAATTCAGAAAGTCGCTCGAAGCCATGCTCCGGTGTTCATT
CATGGCGAATCAGGCTCCGGCAAAGAGCTGGTTGCGCGGGCTATTCACAACCTAAGCCCCCGCGGTGAAAAGCCCTTTAT
TACCGTAAATTGCGGAGCAATCCCTTCTGAGCTCATGGAAAGTGAATTTTTTGGCCATAAAAAAGGTGCCTTTACCGGCG
CCAGCAATAATAAAGATGGTTTTTTCCAAGCGGCAAATGGAGGCACACTATTCTTGGATGAAGTAGCAGATTTACCTCTG
GCTATGCAGGTCAAATTACTGAGAGCAATACAAGAAAGTGTTGTACGACCCGTGGGTAGTGAAAATGAGCAAAAAGTGGA
TGTCCGCATTTTATCTGCCAGCCACAAAGATTTACAAAAACAGGTGCGCGACCAACAGTTTCGAGAAGACTTATTTTATC
GCCTTGATGTGATTCGCATAGAAGTACCCGCTTTGCGACAACGCTTAGACGATATACCCGTTTTAGCGCAATTCATTCTA
GAGAGACTGACTAAGTCTTTGGATATGCAAGACATGACCTTGGCATCCAATGCGATTAAGGCTCTTCAAGATTATCCCTT
TCCTGGCAATGTACGAGAGTTGGAAAACATCCTACAGCGCGCCATAACATTATGTGATAACAGCGTAATAGAAGAATCTG
ATTTACAATTAAACGCCGCCCCTCAAGCAGCGGCACAGCAAGATAGCTCTCATAACTCGTTACCCGCTGGTATGACATTG
GAAGAATATCTCGAAAACATCGAGCGAGATATTATTGAACAAGCTCTGGCGCAATGCAGATGGAATAAAACAGCTACGGC
CGAGCAACTAGGTATGAGTTTTCGCTCGCTCCGCTATCGCCTGAAAAAACTCAAAATAGATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-444)

Response regulator receiver domain (Response_reg)

(4-113)

Sigma-54 interaction domain (Sigma54_activat)

(134-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

56.951

99.776

0.568
  pilR Acinetobacter baumannii strain A118

47.516

100

0.492
  luxO Vibrio cholerae strain A1552

38.411

100

0.389