NTDB

Overview

Name	recG	Type	Machinery gene
Locus tag	ABL390_RS20300	Genome accession	NZ_CP157581
Coordinates	4410471..4412546 (-)	Length	691 a.a.
NCBI ID	WP_003123728.1	Uniprot ID	-
Organism	Pseudomonas aeruginosa strain NPA09B
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4405471..4417546

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABL390_RS20265 (ABL390_20265)	-	4405639..4406040 (+)	402	WP_003098332.1	heme-binding protein	-
ABL390_RS20270 (ABL390_20270)	-	4406174..4406341 (+)	168	WP_003098330.1	rubredoxin	-
ABL390_RS20275 (ABL390_20275)	-	4406525..4406692 (+)	168	WP_003098329.1	rubredoxin	-
ABL390_RS20280 (ABL390_20280)	alkT	4406744..4407898 (+)	1155	WP_003098326.1	rubredoxin-NAD(+) reductase AlkT	-
ABL390_RS20285 (ABL390_20285)	-	4408040..4408372 (+)	333	WP_167755396.1	HU family DNA-binding protein	-
ABL390_RS20290 (ABL390_20290)	-	4408508..4408900 (+)	393	WP_003096629.1	hypothetical protein	-
ABL390_RS20295 (ABL390_20295)	-	4408972..4410381 (-)	1410	WP_003098324.1	HDOD domain-containing protein	-
ABL390_RS20300 (ABL390_20300)	recG	4410471..4412546 (-)	2076	WP_003123728.1	ATP-dependent DNA helicase RecG	Machinery gene
ABL390_RS20305 (ABL390_20305)	oxyR	4412543..4413475 (-)	933	WP_003096622.1	oxidative stress transcriptional regulator OxyR	-
ABL390_RS20310 (ABL390_20310)	-	4413613..4414464 (+)	852	WP_003121310.1	SDR family oxidoreductase	-
ABL390_RS20315 (ABL390_20315)	-	4414464..4415264 (+)	801	WP_003096615.1	AraC family transcriptional regulator	-
ABL390_RS20320 (ABL390_20320)	-	4415331..4415951 (+)	621	WP_003096613.1	LysE family translocator	-
ABL390_RS20325 (ABL390_20325)	-	4415958..4416689 (-)	732	WP_003096611.1	hypothetical protein	-
ABL390_RS20330 (ABL390_20330)	-	4416744..4417124 (-)	381	WP_003096609.1	RidA family protein	-

Sequence

Protein

Download Length: 691 a.a. Molecular weight: 76164.85 Da Isoelectric Point: 7.2590

                                >NTDB_id=906161 ABL390_RS20300 WP_003123728.1 4410471..4412546(-) (recG) [Pseudomonas aeruginosa strain NPA09B]

MTELSRVPVTALKGVGAALAEKLARVGLETLQDILFHLPLRYQDRTRVTAIGALRPGADAVVEGVVAGADVVMGRRRSLL

VRLQDGSGTLSLRFYHFSQAQKDGLKRGTHLRCYGEVRPGASGLEIYHPEYRALNGDEPIPVEQTLTPIYPTTEGLTQQR

LRQLSQQALAMLGPSSLPDWLPAELARDYQLGPLDQAIRYLHRPPPDADIEELAEGRHWAQLRLAFEELLTHQLSLQRLR

EAVRSQAAPRLPAASRLPKRFLANLGFQPTGAQRRVGAEIAYDLAQDEPMLRLVQGDVGAGKTVVAALAALQAIEAGYQV

ALMAPTEILAEQHFLNFSKWLQPLDIEVAWLAGKLKGKARAAALERIGDGAPMVVGTHALFQDEVKFKRLALAIIDEQHR

FGVQQRLALRQKGVDGRLCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRIEVIDRVRAACRE

GRQAYWVCTLIEESEELTCQAAETTYEELSSALGELRVGLIHGRMKPADKAVVMEAFKEGMLQLLVATTVIEVGVDVPNA

SLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPPLSQIGRERLGIMRETSDGFVIAEKDLELRGPGEMLGTRQTG

LLQFKVADLMRDADLLPAVRDAAQSLLAHWPQHVSPLLERWLRHGQQYGQV

Nucleotide

Download Length: 2076 bp

                                >NTDB_id=906161 ABL390_RS20300 WP_003123728.1 4410471..4412546(-) (recG) [Pseudomonas aeruginosa strain NPA09B]

ATGACCGAGCTGTCCAGGGTCCCGGTCACCGCGCTAAAAGGCGTAGGCGCCGCGCTGGCGGAGAAGCTCGCTCGGGTAGG

CCTGGAAACCCTGCAGGACATCCTGTTCCACCTGCCCCTGCGCTACCAGGACCGTACCCGCGTCACCGCCATCGGCGCCC

TGCGGCCAGGGGCCGACGCGGTGGTCGAGGGCGTGGTGGCCGGCGCCGACGTGGTGATGGGGCGCCGCCGCAGCCTGCTG

GTGCGCCTGCAGGACGGCAGCGGCACCCTGAGCCTGCGCTTCTACCATTTCAGCCAGGCGCAGAAGGACGGTCTCAAGCG

CGGCACCCACCTGCGCTGCTACGGCGAAGTCCGGCCGGGTGCCTCGGGCCTGGAGATCTACCATCCGGAATACCGCGCGC

TGAACGGCGACGAGCCGATTCCGGTGGAGCAGACCCTGACGCCGATCTACCCGACTACCGAGGGCCTCACCCAGCAGCGC

CTGCGCCAGTTGAGCCAACAGGCCCTGGCCATGCTCGGCCCCAGCAGCCTGCCCGACTGGCTGCCGGCGGAACTGGCCCG

CGATTACCAACTTGGCCCGCTCGACCAGGCGATCCGCTACCTGCACCGGCCGCCGCCGGATGCCGACATCGAGGAACTGG

CCGAAGGCCGGCACTGGGCGCAGTTGCGCCTGGCCTTCGAAGAACTGCTGACCCACCAGTTATCCCTGCAGCGCCTGCGC

GAAGCCGTGCGTTCGCAGGCAGCGCCGCGCTTGCCGGCGGCCAGCCGCTTGCCGAAACGCTTCCTTGCCAACCTCGGCTT

CCAGCCGACCGGCGCGCAACGCCGGGTCGGCGCGGAGATCGCCTACGACCTGGCCCAGGACGAACCGATGCTGCGCCTGG

TGCAAGGCGACGTCGGCGCCGGCAAGACCGTGGTCGCCGCCCTCGCCGCCCTGCAAGCCATAGAGGCCGGTTACCAGGTG

GCGCTGATGGCGCCGACCGAGATCCTCGCCGAGCAGCATTTCCTCAACTTCAGCAAGTGGCTCCAGCCGCTGGACATCGA

AGTCGCCTGGCTGGCCGGCAAGCTCAAGGGCAAGGCCCGCGCGGCGGCACTGGAACGCATCGGCGACGGCGCGCCGATGG

TGGTCGGCACCCACGCGCTGTTCCAGGATGAAGTGAAATTCAAGCGCCTTGCACTGGCGATCATCGACGAACAGCACCGC

TTCGGCGTGCAGCAGCGCCTAGCCCTGCGCCAGAAGGGCGTGGACGGCAGGCTCTGCCCGCACCAGTTGATCATGACCGC

CACGCCGATCCCGCGGACCCTGGCGATGAGCGCCTATGCCGACCTCGACACCTCGATCCTCGACGAGCTGCCGCCCGGGC

GTACCCCGGTGAATACCGTGCTGGTGGCCGACAGCCGCCGTATCGAGGTGATCGACCGAGTCCGCGCGGCTTGCCGCGAA

GGGCGCCAGGCCTACTGGGTGTGTACCCTGATCGAAGAGTCCGAGGAGCTTACCTGCCAGGCCGCCGAGACCACCTACGA

AGAGCTTTCCTCGGCGCTAGGCGAACTGCGCGTCGGCCTGATCCACGGGCGCATGAAGCCGGCGGACAAGGCCGTGGTGA

TGGAAGCCTTCAAGGAAGGCATGTTGCAACTGCTGGTGGCGACCACGGTGATCGAGGTCGGCGTCGACGTGCCCAACGCC

AGCCTGATGATCATCGAGAACCCCGAGCGCCTTGGCCTGGCCCAACTGCACCAGTTGCGCGGCCGGGTTGGCCGCGGCAG

CGCCGCCAGCCACTGCGTGCTGCTCTACCACCCACCGCTGTCGCAGATCGGCCGCGAGCGGCTGGGCATCATGCGCGAAA

CCAGCGACGGCTTCGTCATCGCCGAGAAGGACCTGGAATTGCGCGGCCCCGGCGAAATGCTCGGCACCCGCCAAACCGGC

CTGCTGCAATTCAAGGTCGCCGACCTGATGCGCGACGCAGACCTGCTGCCGGCGGTCCGCGATGCCGCCCAATCCCTCCT

GGCGCACTGGCCGCAGCATGTCAGCCCGCTGCTCGAACGGTGGTTGCGCCACGGCCAGCAATACGGTCAAGTGTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(293-430)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(614-675)

RecG wedge domain (RecG_wedge)

(12-170)

Helicase conserved C-terminal domain (Helicase_C)

(479-586)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
recG	Neisseria meningitidis strain C311	50.373	97.106	0.489
recG/mmsA	Streptococcus pneumoniae R6	40.868	96.671	0.395
recG/mmsA	Streptococcus pneumoniae R36A	40.868	96.671	0.395
recG	Bacillus subtilis subsp. subtilis str. 168	40.356	97.54	0.394

Detailed information NTG0906161